Gene : Solyc08g061970.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K18787 - thermospermine synthase (ACL5) Description:  Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase
Genomic Order:  1049 Name:  ? Solyc08g061970.2
Secondary Identifier:  ? PAC:36150394
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum BSUBPOLYAMSYN-PWY Solanum lycopersicum pathologic  
Slycopersicum POLYAMINSYN3-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-7528 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g061970.2 0.5kb upstream 0.5kb upstream 5406 true SL2.50ch08: 50190304-50195709 Solanum lycopersicum
Solyc08g061970.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 50190304-50190803 Solanum lycopersicum
Solyc08g061970.2 0.5kb downstream 0.5kb downstream 5406 true SL2.50ch08: 50190804-50196209 Solanum lycopersicum
Solyc08g061970.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 50195710-50196209 Solanum lycopersicum
Solyc08g061970.2 1.0kb upstream 1.0kb upstream 5906 true SL2.50ch08: 50189804-50195709 Solanum lycopersicum
Solyc08g061970.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 50189804-50190803 Solanum lycopersicum
Solyc08g061970.2 1.0kb downstream 1.0kb downstream 5906 true SL2.50ch08: 50190804-50196709 Solanum lycopersicum
Solyc08g061970.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 50195710-50196709 Solanum lycopersicum
Solyc08g061970.2 2.0kb upstream 2.0kb upstream 6906 true SL2.50ch08: 50188804-50195709 Solanum lycopersicum
Solyc08g061970.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 50188804-50190803 Solanum lycopersicum
Solyc08g061970.2 2.0kb downstream 2.0kb downstream 6906 true SL2.50ch08: 50190804-50197709 Solanum lycopersicum
Solyc08g061970.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 50195710-50197709 Solanum lycopersicum
Solyc08g061970.2 5.0kb upstream 5.0kb upstream 9906 true SL2.50ch08: 50185804-50195709 Solanum lycopersicum
Solyc08g061970.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 50185804-50190803 Solanum lycopersicum
Solyc08g061970.2 5.0kb downstream 5.0kb downstream 9906 true SL2.50ch08: 50190804-50200709 Solanum lycopersicum
Solyc08g061970.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 50195710-50200709 Solanum lycopersicum
Solyc08g061970.2 10.0kb upstream 10.0kb upstream 14906 true SL2.50ch08: 50180804-50195709 Solanum lycopersicum
Solyc08g061970.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 50180804-50190803 Solanum lycopersicum
Solyc08g061970.2 10.0kb downstream 10.0kb downstream 14906 true SL2.50ch08: 50190804-50205709 Solanum lycopersicum
Solyc08g061970.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 50195710-50205709 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466930 5263 Asterids View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain