Gene : Solyc08g076840.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) KOG0106//KOG0110//KOG0114//KOG0131//KOG0144//KOG0146 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // RNA-binding protein (RRM superfamily) // Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // RNA-binding protein ETR-3 (RRM superfamily) Description:  Polyadenylate-binding protein 2 (AHRD V1 **-- PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait
Genomic Order:  1812 Name:  ? Solyc08g076840.2
Secondary Identifier:  ? PAC:36150380
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g076840.2 0.5kb upstream 0.5kb upstream 3652 true SL2.50ch08: 60742316-60745967 Solanum lycopersicum
Solyc08g076840.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 60745468-60745967 Solanum lycopersicum
Solyc08g076840.2 0.5kb downstream 0.5kb downstream 3652 true SL2.50ch08: 60741816-60745467 Solanum lycopersicum
Solyc08g076840.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 60741816-60742315 Solanum lycopersicum
Solyc08g076840.2 1.0kb upstream 1.0kb upstream 4152 true SL2.50ch08: 60742316-60746467 Solanum lycopersicum
Solyc08g076840.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 60745468-60746467 Solanum lycopersicum
Solyc08g076840.2 1.0kb downstream 1.0kb downstream 4152 true SL2.50ch08: 60741316-60745467 Solanum lycopersicum
Solyc08g076840.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 60741316-60742315 Solanum lycopersicum
Solyc08g076840.2 2.0kb upstream 2.0kb upstream 5152 true SL2.50ch08: 60742316-60747467 Solanum lycopersicum
Solyc08g076840.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 60745468-60747467 Solanum lycopersicum
Solyc08g076840.2 2.0kb downstream 2.0kb downstream 5152 true SL2.50ch08: 60740316-60745467 Solanum lycopersicum
Solyc08g076840.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 60740316-60742315 Solanum lycopersicum
Solyc08g076840.2 5.0kb upstream 5.0kb upstream 8152 true SL2.50ch08: 60742316-60750467 Solanum lycopersicum
Solyc08g076840.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 60745468-60750467 Solanum lycopersicum
Solyc08g076840.2 5.0kb downstream 5.0kb downstream 8152 true SL2.50ch08: 60737316-60745467 Solanum lycopersicum
Solyc08g076840.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 60737316-60742315 Solanum lycopersicum
Solyc08g076840.2 10.0kb upstream 10.0kb upstream 13152 true SL2.50ch08: 60742316-60755467 Solanum lycopersicum
Solyc08g076840.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 60745468-60755467 Solanum lycopersicum
Solyc08g076840.2 10.0kb downstream 10.0kb downstream 13152 true SL2.50ch08: 60732316-60745467 Solanum lycopersicum
Solyc08g076840.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 60732316-60742315 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466297 5263 Asterids View MSA
123740281 5271 Pentapetalae View MSA
122787743 5272 Eudicot View MSA
122043874 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310205 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain