Gene : Solyc08g078500.2 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PF05703 - Auxin canalisation (Auxin_canalis) Description:  Os02g0658033 protein (Fragment) (AHRD V1 *-*- C7IYY5_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant
Genomic Order:  1977 Name:  ? Solyc08g078500.2
Secondary Identifier:  ? PAC:36150204
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g078500.2 0.5kb upstream 0.5kb upstream 4188 true SL2.50ch08: 62278975-62283162 Solanum lycopersicum
Solyc08g078500.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 62282663-62283162 Solanum lycopersicum
Solyc08g078500.2 0.5kb downstream 0.5kb downstream 4188 true SL2.50ch08: 62278475-62282662 Solanum lycopersicum
Solyc08g078500.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 62278475-62278974 Solanum lycopersicum
Solyc08g078500.2 1.0kb upstream 1.0kb upstream 4688 true SL2.50ch08: 62278975-62283662 Solanum lycopersicum
Solyc08g078500.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 62282663-62283662 Solanum lycopersicum
Solyc08g078500.2 1.0kb downstream 1.0kb downstream 4688 true SL2.50ch08: 62277975-62282662 Solanum lycopersicum
Solyc08g078500.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 62277975-62278974 Solanum lycopersicum
Solyc08g078500.2 2.0kb upstream 2.0kb upstream 5688 true SL2.50ch08: 62278975-62284662 Solanum lycopersicum
Solyc08g078500.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 62282663-62284662 Solanum lycopersicum
Solyc08g078500.2 2.0kb downstream 2.0kb downstream 5688 true SL2.50ch08: 62276975-62282662 Solanum lycopersicum
Solyc08g078500.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 62276975-62278974 Solanum lycopersicum
Solyc08g078500.2 5.0kb upstream 5.0kb upstream 8688 true SL2.50ch08: 62278975-62287662 Solanum lycopersicum
Solyc08g078500.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 62282663-62287662 Solanum lycopersicum
Solyc08g078500.2 5.0kb downstream 5.0kb downstream 8688 true SL2.50ch08: 62273975-62282662 Solanum lycopersicum
Solyc08g078500.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 62273975-62278974 Solanum lycopersicum
Solyc08g078500.2 10.0kb upstream 10.0kb upstream 13688 true SL2.50ch08: 62278975-62292662 Solanum lycopersicum
Solyc08g078500.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 62282663-62292662 Solanum lycopersicum
Solyc08g078500.2 10.0kb downstream 10.0kb downstream 13688 true SL2.50ch08: 62268975-62282662 Solanum lycopersicum
Solyc08g078500.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 62268975-62278974 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476946 5263 Asterids View MSA
123741992 5271 Pentapetalae View MSA
122794510 5272 Eudicot View MSA
122048590 5273 Angiosperm View MSA
121311030 5274 Embryophyte View MSA
123348384 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain