Gene : Solyc08g078280.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1955 Name:  ? Solyc08g078280.1
Secondary Identifier:  ? PAC:36151295
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc08g078280.1 0.5kb upstream 0.5kb upstream 1931 true SL2.50ch08: 62092619-62094549 Solanum lycopersicum
Solyc08g078280.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch08: 62094050-62094549 Solanum lycopersicum
Solyc08g078280.1 0.5kb downstream 0.5kb downstream 1931 true SL2.50ch08: 62092119-62094049 Solanum lycopersicum
Solyc08g078280.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch08: 62092119-62092618 Solanum lycopersicum
Solyc08g078280.1 1.0kb upstream 1.0kb upstream 2431 true SL2.50ch08: 62092619-62095049 Solanum lycopersicum
Solyc08g078280.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch08: 62094050-62095049 Solanum lycopersicum
Solyc08g078280.1 1.0kb downstream 1.0kb downstream 2431 true SL2.50ch08: 62091619-62094049 Solanum lycopersicum
Solyc08g078280.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch08: 62091619-62092618 Solanum lycopersicum
Solyc08g078280.1 2.0kb upstream 2.0kb upstream 3431 true SL2.50ch08: 62092619-62096049 Solanum lycopersicum
Solyc08g078280.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch08: 62094050-62096049 Solanum lycopersicum
Solyc08g078280.1 2.0kb downstream 2.0kb downstream 3431 true SL2.50ch08: 62090619-62094049 Solanum lycopersicum
Solyc08g078280.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch08: 62090619-62092618 Solanum lycopersicum
Solyc08g078280.1 5.0kb upstream 5.0kb upstream 6431 true SL2.50ch08: 62092619-62099049 Solanum lycopersicum
Solyc08g078280.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch08: 62094050-62099049 Solanum lycopersicum
Solyc08g078280.1 5.0kb downstream 5.0kb downstream 6431 true SL2.50ch08: 62087619-62094049 Solanum lycopersicum
Solyc08g078280.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch08: 62087619-62092618 Solanum lycopersicum
Solyc08g078280.1 10.0kb upstream 10.0kb upstream 11431 true SL2.50ch08: 62092619-62104049 Solanum lycopersicum
Solyc08g078280.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch08: 62094050-62104049 Solanum lycopersicum
Solyc08g078280.1 10.0kb downstream 10.0kb downstream 11431 true SL2.50ch08: 62082619-62094049 Solanum lycopersicum
Solyc08g078280.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch08: 62082619-62092618 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470187 5263 Asterids View MSA
123748514 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain