Gene : Solyc07g055310.1 S. lycopersicum ITAG2.4
Defline:  (1 of 67) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LGJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1864 Name:  ? Solyc07g055310.1
Secondary Identifier:  ? PAC:36160597
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g055310.1 0.5kb upstream 0.5kb upstream 2477 true SL2.50ch07: 63391445-63393921 Solanum lycopersicum
Solyc07g055310.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 63393422-63393921 Solanum lycopersicum
Solyc07g055310.1 0.5kb downstream 0.5kb downstream 2477 true SL2.50ch07: 63390945-63393421 Solanum lycopersicum
Solyc07g055310.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 63390945-63391444 Solanum lycopersicum
Solyc07g055310.1 1.0kb upstream 1.0kb upstream 2977 true SL2.50ch07: 63391445-63394421 Solanum lycopersicum
Solyc07g055310.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 63393422-63394421 Solanum lycopersicum
Solyc07g055310.1 1.0kb downstream 1.0kb downstream 2977 true SL2.50ch07: 63390445-63393421 Solanum lycopersicum
Solyc07g055310.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 63390445-63391444 Solanum lycopersicum
Solyc07g055310.1 2.0kb upstream 2.0kb upstream 3977 true SL2.50ch07: 63391445-63395421 Solanum lycopersicum
Solyc07g055310.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 63393422-63395421 Solanum lycopersicum
Solyc07g055310.1 2.0kb downstream 2.0kb downstream 3977 true SL2.50ch07: 63389445-63393421 Solanum lycopersicum
Solyc07g055310.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 63389445-63391444 Solanum lycopersicum
Solyc07g055310.1 5.0kb upstream 5.0kb upstream 6977 true SL2.50ch07: 63391445-63398421 Solanum lycopersicum
Solyc07g055310.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 63393422-63398421 Solanum lycopersicum
Solyc07g055310.1 5.0kb downstream 5.0kb downstream 6977 true SL2.50ch07: 63386445-63393421 Solanum lycopersicum
Solyc07g055310.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 63386445-63391444 Solanum lycopersicum
Solyc07g055310.1 10.0kb upstream 10.0kb upstream 11977 true SL2.50ch07: 63391445-63403421 Solanum lycopersicum
Solyc07g055310.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 63393422-63403421 Solanum lycopersicum
Solyc07g055310.1 10.0kb downstream 10.0kb downstream 11977 true SL2.50ch07: 63381445-63393421 Solanum lycopersicum
Solyc07g055310.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 63381445-63391444 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026268 5273 Angiosperm View MSA
121473324 5263 Asterids View MSA
123739998 5271 Pentapetalae View MSA
122787628 5272 Eudicot View MSA
121296253 5274 Embryophyte View MSA
123334450 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain