Gene : Solyc07g025190.1 S. lycopersicum ITAG2.4
Defline:  (1 of 15) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Description:  Integrase core domain containing protein (AHRD V1 *-*- Q0KIP7_SOLDE); contains Interpro domain(s) IPR005162 Retrotransposon gag protein
Genomic Order:  805 Name:  ? Solyc07g025190.1
Secondary Identifier:  ? PAC:36161316
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc07g025190.1 0.5kb upstream 0.5kb upstream 2283 true SL2.50ch07: 26530825-26533107 Solanum lycopersicum
Solyc07g025190.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch07: 26530825-26531324 Solanum lycopersicum
Solyc07g025190.1 0.5kb downstream 0.5kb downstream 2283 true SL2.50ch07: 26531325-26533607 Solanum lycopersicum
Solyc07g025190.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch07: 26533108-26533607 Solanum lycopersicum
Solyc07g025190.1 1.0kb upstream 1.0kb upstream 2783 true SL2.50ch07: 26530325-26533107 Solanum lycopersicum
Solyc07g025190.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch07: 26530325-26531324 Solanum lycopersicum
Solyc07g025190.1 1.0kb downstream 1.0kb downstream 2783 true SL2.50ch07: 26531325-26534107 Solanum lycopersicum
Solyc07g025190.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch07: 26533108-26534107 Solanum lycopersicum
Solyc07g025190.1 2.0kb upstream 2.0kb upstream 3783 true SL2.50ch07: 26529325-26533107 Solanum lycopersicum
Solyc07g025190.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch07: 26529325-26531324 Solanum lycopersicum
Solyc07g025190.1 2.0kb downstream 2.0kb downstream 3783 true SL2.50ch07: 26531325-26535107 Solanum lycopersicum
Solyc07g025190.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch07: 26533108-26535107 Solanum lycopersicum
Solyc07g025190.1 5.0kb upstream 5.0kb upstream 6783 true SL2.50ch07: 26526325-26533107 Solanum lycopersicum
Solyc07g025190.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch07: 26526325-26531324 Solanum lycopersicum
Solyc07g025190.1 5.0kb downstream 5.0kb downstream 6783 true SL2.50ch07: 26531325-26538107 Solanum lycopersicum
Solyc07g025190.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch07: 26533108-26538107 Solanum lycopersicum
Solyc07g025190.1 10.0kb upstream 10.0kb upstream 11783 true SL2.50ch07: 26521325-26533107 Solanum lycopersicum
Solyc07g025190.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch07: 26521325-26531324 Solanum lycopersicum
Solyc07g025190.1 10.0kb downstream 10.0kb downstream 11783 true SL2.50ch07: 26531325-26543107 Solanum lycopersicum
Solyc07g025190.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch07: 26533108-26543107 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029860 5273 Angiosperm View MSA
121369006 5263 Asterids Singleton cluster - no MSA
123753404 5271 Pentapetalae View MSA
122796607 5272 Eudicot View MSA
121350456 5274 Embryophyte View MSA
123381742 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain