Gene : Solyc03g113370.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR22975 - UBIQUITIN SPECIFIC PROTEINASE Description:  Inactive ubiquitin carboxyl-terminal hydrolase 54 (AHRD V1 *-*- UBP54_MOUSE); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629
Genomic Order:  2382 Name:  ? Solyc03g113370.2
Secondary Identifier:  ? PAC:36134464
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc03g113370.2 0.5kb upstream 0.5kb upstream 9237 true SL2.50ch03: 63514240-63523476 Solanum lycopersicum
Solyc03g113370.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch03: 63522977-63523476 Solanum lycopersicum
Solyc03g113370.2 0.5kb downstream 0.5kb downstream 9237 true SL2.50ch03: 63513740-63522976 Solanum lycopersicum
Solyc03g113370.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch03: 63513740-63514239 Solanum lycopersicum
Solyc03g113370.2 1.0kb upstream 1.0kb upstream 9737 true SL2.50ch03: 63514240-63523976 Solanum lycopersicum
Solyc03g113370.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch03: 63522977-63523976 Solanum lycopersicum
Solyc03g113370.2 1.0kb downstream 1.0kb downstream 9737 true SL2.50ch03: 63513240-63522976 Solanum lycopersicum
Solyc03g113370.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch03: 63513240-63514239 Solanum lycopersicum
Solyc03g113370.2 2.0kb upstream 2.0kb upstream 10737 true SL2.50ch03: 63514240-63524976 Solanum lycopersicum
Solyc03g113370.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch03: 63522977-63524976 Solanum lycopersicum
Solyc03g113370.2 2.0kb downstream 2.0kb downstream 10737 true SL2.50ch03: 63512240-63522976 Solanum lycopersicum
Solyc03g113370.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch03: 63512240-63514239 Solanum lycopersicum
Solyc03g113370.2 5.0kb upstream 5.0kb upstream 13737 true SL2.50ch03: 63514240-63527976 Solanum lycopersicum
Solyc03g113370.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch03: 63522977-63527976 Solanum lycopersicum
Solyc03g113370.2 5.0kb downstream 5.0kb downstream 13737 true SL2.50ch03: 63509240-63522976 Solanum lycopersicum
Solyc03g113370.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch03: 63509240-63514239 Solanum lycopersicum
Solyc03g113370.2 10.0kb upstream 10.0kb upstream 18737 true SL2.50ch03: 63514240-63532976 Solanum lycopersicum
Solyc03g113370.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch03: 63522977-63532976 Solanum lycopersicum
Solyc03g113370.2 10.0kb downstream 10.0kb downstream 18737 true SL2.50ch03: 63504240-63522976 Solanum lycopersicum
Solyc03g113370.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch03: 63504240-63514239 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477708 5263 Asterids View MSA
123749894 5271 Pentapetalae View MSA
122797305 5272 Eudicot View MSA
122047573 5273 Angiosperm View MSA
121346745 5274 Embryophyte View MSA
123380438 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain