Gene : Solyc05g012250.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  625 Name:  ? Solyc05g012250.1
Secondary Identifier:  ? PAC:36144441
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g012250.1 0.5kb upstream 0.5kb upstream 6252 true SL2.50ch05: 5539986-5546237 Solanum lycopersicum
Solyc05g012250.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 5545738-5546237 Solanum lycopersicum
Solyc05g012250.1 0.5kb downstream 0.5kb downstream 6252 true SL2.50ch05: 5539486-5545737 Solanum lycopersicum
Solyc05g012250.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 5539486-5539985 Solanum lycopersicum
Solyc05g012250.1 1.0kb upstream 1.0kb upstream 6752 true SL2.50ch05: 5539986-5546737 Solanum lycopersicum
Solyc05g012250.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 5545738-5546737 Solanum lycopersicum
Solyc05g012250.1 1.0kb downstream 1.0kb downstream 6752 true SL2.50ch05: 5538986-5545737 Solanum lycopersicum
Solyc05g012250.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 5538986-5539985 Solanum lycopersicum
Solyc05g012250.1 2.0kb upstream 2.0kb upstream 7752 true SL2.50ch05: 5539986-5547737 Solanum lycopersicum
Solyc05g012250.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 5545738-5547737 Solanum lycopersicum
Solyc05g012250.1 2.0kb downstream 2.0kb downstream 7752 true SL2.50ch05: 5537986-5545737 Solanum lycopersicum
Solyc05g012250.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 5537986-5539985 Solanum lycopersicum
Solyc05g012250.1 5.0kb upstream 5.0kb upstream 10752 true SL2.50ch05: 5539986-5550737 Solanum lycopersicum
Solyc05g012250.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 5545738-5550737 Solanum lycopersicum
Solyc05g012250.1 5.0kb downstream 5.0kb downstream 10752 true SL2.50ch05: 5534986-5545737 Solanum lycopersicum
Solyc05g012250.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 5534986-5539985 Solanum lycopersicum
Solyc05g012250.1 10.0kb upstream 10.0kb upstream 15752 true SL2.50ch05: 5539986-5555737 Solanum lycopersicum
Solyc05g012250.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 5545738-5555737 Solanum lycopersicum
Solyc05g012250.1 10.0kb downstream 10.0kb downstream 15752 true SL2.50ch05: 5529986-5545737 Solanum lycopersicum
Solyc05g012250.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 5529986-5539985 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466150 5263 Asterids View MSA
123743446 5271 Pentapetalae View MSA
122788248 5272 Eudicot View MSA
122047755 5273 Angiosperm View MSA
121310787 5274 Embryophyte View MSA
123348188 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain