Gene : Solyc05g010300.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K03011 - DNA-directed RNA polymerase II subunit RPB3 (RPB3, POLR2C) Description:  DNA-directed RNA polymerase II subunit 3 (AHRD V1 ***- A4RSP9_OSTLU); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Genomic Order:  529 Name:  ? Solyc05g010300.2
Secondary Identifier:  ? PAC:36145019
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g010300.2 0.5kb upstream 0.5kb upstream 6048 true SL2.50ch05: 4454479-4460526 Solanum lycopersicum
Solyc05g010300.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 4454479-4454978 Solanum lycopersicum
Solyc05g010300.2 0.5kb downstream 0.5kb downstream 6048 true SL2.50ch05: 4454979-4461026 Solanum lycopersicum
Solyc05g010300.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 4460527-4461026 Solanum lycopersicum
Solyc05g010300.2 1.0kb upstream 1.0kb upstream 6548 true SL2.50ch05: 4453979-4460526 Solanum lycopersicum
Solyc05g010300.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 4453979-4454978 Solanum lycopersicum
Solyc05g010300.2 1.0kb downstream 1.0kb downstream 6548 true SL2.50ch05: 4454979-4461526 Solanum lycopersicum
Solyc05g010300.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 4460527-4461526 Solanum lycopersicum
Solyc05g010300.2 2.0kb upstream 2.0kb upstream 7548 true SL2.50ch05: 4452979-4460526 Solanum lycopersicum
Solyc05g010300.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 4452979-4454978 Solanum lycopersicum
Solyc05g010300.2 2.0kb downstream 2.0kb downstream 7548 true SL2.50ch05: 4454979-4462526 Solanum lycopersicum
Solyc05g010300.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 4460527-4462526 Solanum lycopersicum
Solyc05g010300.2 5.0kb upstream 5.0kb upstream 10548 true SL2.50ch05: 4449979-4460526 Solanum lycopersicum
Solyc05g010300.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 4449979-4454978 Solanum lycopersicum
Solyc05g010300.2 5.0kb downstream 5.0kb downstream 10548 true SL2.50ch05: 4454979-4465526 Solanum lycopersicum
Solyc05g010300.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 4460527-4465526 Solanum lycopersicum
Solyc05g010300.2 10.0kb upstream 10.0kb upstream 15548 true SL2.50ch05: 4444979-4460526 Solanum lycopersicum
Solyc05g010300.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 4444979-4454978 Solanum lycopersicum
Solyc05g010300.2 10.0kb downstream 10.0kb downstream 15548 true SL2.50ch05: 4454979-4470526 Solanum lycopersicum
Solyc05g010300.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 4460527-4470526 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470051 5263 Asterids View MSA
123743057 5271 Pentapetalae View MSA
122793148 5272 Eudicot View MSA
122045385 5273 Angiosperm View MSA
121347038 5274 Embryophyte View MSA
123424070 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain