Gene : Solyc05g023800.2 S. lycopersicum ITAG2.4
Defline:  (1 of 3) K07936 - GTP-binding nuclear protein Ran (RAN) Description:  GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR002041 Ran GTPase
Genomic Order:  1246 Name:  ? Solyc05g023800.2
Secondary Identifier:  ? PAC:36144729
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Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ILEUDEG-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-5136 Solanum lycopersicum pathologic  
Slycopersicum PWY-5138 Solanum lycopersicum pathologic  
Slycopersicum PWY-561 Solanum lycopersicum pathologic  
Slycopersicum PWY-6435 Solanum lycopersicum pathologic  
Slycopersicum PWY-7036 Solanum lycopersicum pathologic  
Slycopersicum PWY-735 Solanum lycopersicum pathologic  
Slycopersicum PWY-7606 Solanum lycopersicum pathologic  
Slycopersicum PWY-7726 Solanum lycopersicum pathologic  
Slycopersicum VALDEG-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g023800.2 0.5kb upstream 0.5kb upstream 3931 true SL2.50ch05: 29353413-29357343 Solanum lycopersicum
Solyc05g023800.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 29353413-29353912 Solanum lycopersicum
Solyc05g023800.2 0.5kb downstream 0.5kb downstream 3931 true SL2.50ch05: 29353913-29357843 Solanum lycopersicum
Solyc05g023800.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 29357344-29357843 Solanum lycopersicum
Solyc05g023800.2 1.0kb upstream 1.0kb upstream 4431 true SL2.50ch05: 29352913-29357343 Solanum lycopersicum
Solyc05g023800.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 29352913-29353912 Solanum lycopersicum
Solyc05g023800.2 1.0kb downstream 1.0kb downstream 4431 true SL2.50ch05: 29353913-29358343 Solanum lycopersicum
Solyc05g023800.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 29357344-29358343 Solanum lycopersicum
Solyc05g023800.2 2.0kb upstream 2.0kb upstream 5431 true SL2.50ch05: 29351913-29357343 Solanum lycopersicum
Solyc05g023800.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 29351913-29353912 Solanum lycopersicum
Solyc05g023800.2 2.0kb downstream 2.0kb downstream 5431 true SL2.50ch05: 29353913-29359343 Solanum lycopersicum
Solyc05g023800.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 29357344-29359343 Solanum lycopersicum
Solyc05g023800.2 5.0kb upstream 5.0kb upstream 8431 true SL2.50ch05: 29348913-29357343 Solanum lycopersicum
Solyc05g023800.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 29348913-29353912 Solanum lycopersicum
Solyc05g023800.2 5.0kb downstream 5.0kb downstream 8431 true SL2.50ch05: 29353913-29362343 Solanum lycopersicum
Solyc05g023800.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 29357344-29362343 Solanum lycopersicum
Solyc05g023800.2 10.0kb upstream 10.0kb upstream 13431 true SL2.50ch05: 29343913-29357343 Solanum lycopersicum
Solyc05g023800.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 29343913-29353912 Solanum lycopersicum
Solyc05g023800.2 10.0kb downstream 10.0kb downstream 13431 true SL2.50ch05: 29353913-29367343 Solanum lycopersicum
Solyc05g023800.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 29357344-29367343 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476319 5263 Asterids View MSA
123749309 5271 Pentapetalae View MSA
122790069 5272 Eudicot View MSA
122051651 5273 Angiosperm View MSA
121349425 5274 Embryophyte View MSA
123424763 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain