Gene : Solyc05g016480.1 S. lycopersicum ITAG2.4
Defline:  (1 of 55) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H Description:  Pro-Pol polyprotein (AHRD V1 ***- POL_SFV3L); contains Interpro domain(s) IPR001584 Integrase, catalytic core
Genomic Order:  1037 Name:  ? Solyc05g016480.1
Secondary Identifier:  ? PAC:36146401
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc05g016480.1 0.5kb upstream 0.5kb upstream 1313 true SL2.50ch05: 17268601-17269913 Solanum lycopersicum
Solyc05g016480.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch05: 17269414-17269913 Solanum lycopersicum
Solyc05g016480.1 0.5kb downstream 0.5kb downstream 1313 true SL2.50ch05: 17268101-17269413 Solanum lycopersicum
Solyc05g016480.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch05: 17268101-17268600 Solanum lycopersicum
Solyc05g016480.1 1.0kb upstream 1.0kb upstream 1813 true SL2.50ch05: 17268601-17270413 Solanum lycopersicum
Solyc05g016480.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch05: 17269414-17270413 Solanum lycopersicum
Solyc05g016480.1 1.0kb downstream 1.0kb downstream 1813 true SL2.50ch05: 17267601-17269413 Solanum lycopersicum
Solyc05g016480.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch05: 17267601-17268600 Solanum lycopersicum
Solyc05g016480.1 2.0kb upstream 2.0kb upstream 2813 true SL2.50ch05: 17268601-17271413 Solanum lycopersicum
Solyc05g016480.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch05: 17269414-17271413 Solanum lycopersicum
Solyc05g016480.1 2.0kb downstream 2.0kb downstream 2813 true SL2.50ch05: 17266601-17269413 Solanum lycopersicum
Solyc05g016480.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch05: 17266601-17268600 Solanum lycopersicum
Solyc05g016480.1 5.0kb upstream 5.0kb upstream 5813 true SL2.50ch05: 17268601-17274413 Solanum lycopersicum
Solyc05g016480.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch05: 17269414-17274413 Solanum lycopersicum
Solyc05g016480.1 5.0kb downstream 5.0kb downstream 5813 true SL2.50ch05: 17263601-17269413 Solanum lycopersicum
Solyc05g016480.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch05: 17263601-17268600 Solanum lycopersicum
Solyc05g016480.1 10.0kb upstream 10.0kb upstream 10813 true SL2.50ch05: 17268601-17279413 Solanum lycopersicum
Solyc05g016480.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch05: 17269414-17279413 Solanum lycopersicum
Solyc05g016480.1 10.0kb downstream 10.0kb downstream 10813 true SL2.50ch05: 17258601-17269413 Solanum lycopersicum
Solyc05g016480.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch05: 17258601-17268600 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782467 5273 Angiosperm View MSA
121386107 5263 Asterids View MSA
123752904 5271 Pentapetalae View MSA
122774849 5272 Eudicot View MSA
121351013 5274 Embryophyte View MSA
123381971 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain