Gene : Solyc06g030570.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K06941 - 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] (rlmN) Description:  Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- B5W4V1_SPIMA); contains Interpro domain(s) IPR007197 Radical SAM
Genomic Order:  553 Name:  ? Solyc06g030570.2
Secondary Identifier:  ? PAC:36129750
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g030570.2 0.5kb upstream 0.5kb upstream 7159 true SL2.50ch06: 19808340-19815498 Solanum lycopersicum
Solyc06g030570.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 19808340-19808839 Solanum lycopersicum
Solyc06g030570.2 0.5kb downstream 0.5kb downstream 7159 true SL2.50ch06: 19808840-19815998 Solanum lycopersicum
Solyc06g030570.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 19815499-19815998 Solanum lycopersicum
Solyc06g030570.2 1.0kb upstream 1.0kb upstream 7659 true SL2.50ch06: 19807840-19815498 Solanum lycopersicum
Solyc06g030570.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 19807840-19808839 Solanum lycopersicum
Solyc06g030570.2 1.0kb downstream 1.0kb downstream 7659 true SL2.50ch06: 19808840-19816498 Solanum lycopersicum
Solyc06g030570.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 19815499-19816498 Solanum lycopersicum
Solyc06g030570.2 2.0kb upstream 2.0kb upstream 8659 true SL2.50ch06: 19806840-19815498 Solanum lycopersicum
Solyc06g030570.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 19806840-19808839 Solanum lycopersicum
Solyc06g030570.2 2.0kb downstream 2.0kb downstream 8659 true SL2.50ch06: 19808840-19817498 Solanum lycopersicum
Solyc06g030570.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 19815499-19817498 Solanum lycopersicum
Solyc06g030570.2 5.0kb upstream 5.0kb upstream 11659 true SL2.50ch06: 19803840-19815498 Solanum lycopersicum
Solyc06g030570.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 19803840-19808839 Solanum lycopersicum
Solyc06g030570.2 5.0kb downstream 5.0kb downstream 11659 true SL2.50ch06: 19808840-19820498 Solanum lycopersicum
Solyc06g030570.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 19815499-19820498 Solanum lycopersicum
Solyc06g030570.2 10.0kb upstream 10.0kb upstream 16659 true SL2.50ch06: 19798840-19815498 Solanum lycopersicum
Solyc06g030570.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 19798840-19808839 Solanum lycopersicum
Solyc06g030570.2 10.0kb downstream 10.0kb downstream 16659 true SL2.50ch06: 19808840-19825498 Solanum lycopersicum
Solyc06g030570.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 19815499-19825498 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121368316 5263 Asterids Singleton cluster - no MSA
123743961 5271 Pentapetalae View MSA
122788034 5272 Eudicot View MSA
122048523 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121344688 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain