Gene : Solyc06g062510.2 S. lycopersicum ITAG2.4

Defline:  (1 of 2) K12197 - charged multivesicular body protein 1 (CHMP1, VPS46, DID2) Description:  Charged multivesicular body protein 1b (AHRD V1 ***- B6T9W6_MAIZE); contains Interpro domain(s) IPR005024 Snf7
Genomic Order:  1410 Name:  ? Solyc06g062510.2
Secondary Identifier:  ? PAC:36130398

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g062510.2 0.5kb upstream 0.5kb upstream 1711 true SL2.50ch06: 39432772-39434482 Solanum lycopersicum
Solyc06g062510.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 39432772-39433271 Solanum lycopersicum
Solyc06g062510.2 0.5kb downstream 0.5kb downstream 1711 true SL2.50ch06: 39433272-39434982 Solanum lycopersicum
Solyc06g062510.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 39434483-39434982 Solanum lycopersicum
Solyc06g062510.2 1.0kb upstream 1.0kb upstream 2211 true SL2.50ch06: 39432272-39434482 Solanum lycopersicum
Solyc06g062510.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 39432272-39433271 Solanum lycopersicum
Solyc06g062510.2 1.0kb downstream 1.0kb downstream 2211 true SL2.50ch06: 39433272-39435482 Solanum lycopersicum
Solyc06g062510.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 39434483-39435482 Solanum lycopersicum
Solyc06g062510.2 2.0kb upstream 2.0kb upstream 3211 true SL2.50ch06: 39431272-39434482 Solanum lycopersicum
Solyc06g062510.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 39431272-39433271 Solanum lycopersicum
Solyc06g062510.2 2.0kb downstream 2.0kb downstream 3211 true SL2.50ch06: 39433272-39436482 Solanum lycopersicum
Solyc06g062510.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 39434483-39436482 Solanum lycopersicum
Solyc06g062510.2 5.0kb upstream 5.0kb upstream 6211 true SL2.50ch06: 39428272-39434482 Solanum lycopersicum
Solyc06g062510.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 39428272-39433271 Solanum lycopersicum
Solyc06g062510.2 5.0kb downstream 5.0kb downstream 6211 true SL2.50ch06: 39433272-39439482 Solanum lycopersicum
Solyc06g062510.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 39434483-39439482 Solanum lycopersicum
Solyc06g062510.2 10.0kb upstream 10.0kb upstream 11211 true SL2.50ch06: 39423272-39434482 Solanum lycopersicum
Solyc06g062510.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 39423272-39433271 Solanum lycopersicum
Solyc06g062510.2 10.0kb downstream 10.0kb downstream 11211 true SL2.50ch06: 39433272-39444482 Solanum lycopersicum
Solyc06g062510.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 39434483-39444482 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121389016 5263 Asterids View MSA
123748216 5271 Pentapetalae View MSA
122794716 5272 Eudicot View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain