Gene : Solyc06g068040.2 S. lycopersicum ITAG2.4
Defline:  (1 of 15) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Description:  Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28
Genomic Order:  1760 Name:  ? Solyc06g068040.2
Secondary Identifier:  ? PAC:36130239
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-1081 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g068040.2 0.5kb upstream 0.5kb upstream 3648 true SL2.50ch06: 42165424-42169071 Solanum lycopersicum
Solyc06g068040.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 42165424-42165923 Solanum lycopersicum
Solyc06g068040.2 0.5kb downstream 0.5kb downstream 3648 true SL2.50ch06: 42165924-42169571 Solanum lycopersicum
Solyc06g068040.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 42169072-42169571 Solanum lycopersicum
Solyc06g068040.2 1.0kb upstream 1.0kb upstream 4148 true SL2.50ch06: 42164924-42169071 Solanum lycopersicum
Solyc06g068040.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 42164924-42165923 Solanum lycopersicum
Solyc06g068040.2 1.0kb downstream 1.0kb downstream 4148 true SL2.50ch06: 42165924-42170071 Solanum lycopersicum
Solyc06g068040.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 42169072-42170071 Solanum lycopersicum
Solyc06g068040.2 2.0kb upstream 2.0kb upstream 5148 true SL2.50ch06: 42163924-42169071 Solanum lycopersicum
Solyc06g068040.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 42163924-42165923 Solanum lycopersicum
Solyc06g068040.2 2.0kb downstream 2.0kb downstream 5148 true SL2.50ch06: 42165924-42171071 Solanum lycopersicum
Solyc06g068040.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 42169072-42171071 Solanum lycopersicum
Solyc06g068040.2 5.0kb upstream 5.0kb upstream 8148 true SL2.50ch06: 42160924-42169071 Solanum lycopersicum
Solyc06g068040.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 42160924-42165923 Solanum lycopersicum
Solyc06g068040.2 5.0kb downstream 5.0kb downstream 8148 true SL2.50ch06: 42165924-42174071 Solanum lycopersicum
Solyc06g068040.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 42169072-42174071 Solanum lycopersicum
Solyc06g068040.2 10.0kb upstream 10.0kb upstream 13148 true SL2.50ch06: 42155924-42169071 Solanum lycopersicum
Solyc06g068040.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 42155924-42165923 Solanum lycopersicum
Solyc06g068040.2 10.0kb downstream 10.0kb downstream 13148 true SL2.50ch06: 42165924-42179071 Solanum lycopersicum
Solyc06g068040.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 42169072-42179071 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121368424 5263 Asterids Singleton cluster - no MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain