Gene : Solyc06g071920.2 S. lycopersicum ITAG2.4
Defline:  (1 of 3) PTHR10836:SF59 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC Description:  Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase
Genomic Order:  2047 Name:  ? Solyc06g071920.2
Secondary Identifier:  ? PAC:36129219
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum ANAEROFRUCAT-PWY Solanum lycopersicum pathologic  
Slycopersicum ANAGLYCOLYSIS-PWY Solanum lycopersicum pathologic  
Slycopersicum GLUCONEO-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-1042 Solanum lycopersicum pathologic  
Slycopersicum PWY-5464 Solanum lycopersicum pathologic  
Slycopersicum SUCSYN-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc06g071920.2 0.5kb upstream 0.5kb upstream 4366 true SL2.50ch06: 44308521-44312886 Solanum lycopersicum
Solyc06g071920.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch06: 44312387-44312886 Solanum lycopersicum
Solyc06g071920.2 0.5kb downstream 0.5kb downstream 4366 true SL2.50ch06: 44308021-44312386 Solanum lycopersicum
Solyc06g071920.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch06: 44308021-44308520 Solanum lycopersicum
Solyc06g071920.2 1.0kb upstream 1.0kb upstream 4866 true SL2.50ch06: 44308521-44313386 Solanum lycopersicum
Solyc06g071920.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch06: 44312387-44313386 Solanum lycopersicum
Solyc06g071920.2 1.0kb downstream 1.0kb downstream 4866 true SL2.50ch06: 44307521-44312386 Solanum lycopersicum
Solyc06g071920.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch06: 44307521-44308520 Solanum lycopersicum
Solyc06g071920.2 2.0kb upstream 2.0kb upstream 5866 true SL2.50ch06: 44308521-44314386 Solanum lycopersicum
Solyc06g071920.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch06: 44312387-44314386 Solanum lycopersicum
Solyc06g071920.2 2.0kb downstream 2.0kb downstream 5866 true SL2.50ch06: 44306521-44312386 Solanum lycopersicum
Solyc06g071920.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch06: 44306521-44308520 Solanum lycopersicum
Solyc06g071920.2 5.0kb upstream 5.0kb upstream 8866 true SL2.50ch06: 44308521-44317386 Solanum lycopersicum
Solyc06g071920.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch06: 44312387-44317386 Solanum lycopersicum
Solyc06g071920.2 5.0kb downstream 5.0kb downstream 8866 true SL2.50ch06: 44303521-44312386 Solanum lycopersicum
Solyc06g071920.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch06: 44303521-44308520 Solanum lycopersicum
Solyc06g071920.2 10.0kb upstream 10.0kb upstream 13866 true SL2.50ch06: 44308521-44322386 Solanum lycopersicum
Solyc06g071920.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch06: 44312387-44322386 Solanum lycopersicum
Solyc06g071920.2 10.0kb downstream 10.0kb downstream 13866 true SL2.50ch06: 44298521-44312386 Solanum lycopersicum
Solyc06g071920.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch06: 44298521-44308520 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121385128 5263 Asterids View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain