Gene : Solyc11g012570.1 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  653 Name:  ? Solyc11g012570.1
Secondary Identifier:  ? PAC:36153203
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g012570.1 0.5kb upstream 0.5kb upstream 2105 true SL2.50ch11: 5376206-5378310 Solanum lycopersicum
Solyc11g012570.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 5377811-5378310 Solanum lycopersicum
Solyc11g012570.1 0.5kb downstream 0.5kb downstream 2105 true SL2.50ch11: 5375706-5377810 Solanum lycopersicum
Solyc11g012570.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 5375706-5376205 Solanum lycopersicum
Solyc11g012570.1 1.0kb upstream 1.0kb upstream 2605 true SL2.50ch11: 5376206-5378810 Solanum lycopersicum
Solyc11g012570.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 5377811-5378810 Solanum lycopersicum
Solyc11g012570.1 1.0kb downstream 1.0kb downstream 2605 true SL2.50ch11: 5375206-5377810 Solanum lycopersicum
Solyc11g012570.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 5375206-5376205 Solanum lycopersicum
Solyc11g012570.1 2.0kb upstream 2.0kb upstream 3605 true SL2.50ch11: 5376206-5379810 Solanum lycopersicum
Solyc11g012570.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 5377811-5379810 Solanum lycopersicum
Solyc11g012570.1 2.0kb downstream 2.0kb downstream 3605 true SL2.50ch11: 5374206-5377810 Solanum lycopersicum
Solyc11g012570.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 5374206-5376205 Solanum lycopersicum
Solyc11g012570.1 5.0kb upstream 5.0kb upstream 6605 true SL2.50ch11: 5376206-5382810 Solanum lycopersicum
Solyc11g012570.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 5377811-5382810 Solanum lycopersicum
Solyc11g012570.1 5.0kb downstream 5.0kb downstream 6605 true SL2.50ch11: 5371206-5377810 Solanum lycopersicum
Solyc11g012570.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 5371206-5376205 Solanum lycopersicum
Solyc11g012570.1 10.0kb upstream 10.0kb upstream 11605 true SL2.50ch11: 5376206-5387810 Solanum lycopersicum
Solyc11g012570.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 5377811-5387810 Solanum lycopersicum
Solyc11g012570.1 10.0kb downstream 10.0kb downstream 11605 true SL2.50ch11: 5366206-5377810 Solanum lycopersicum
Solyc11g012570.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 5366206-5376205 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474018 5263 Asterids View MSA
123741798 5271 Pentapetalae View MSA
122789514 5272 Eudicot View MSA
122049493 5273 Angiosperm View MSA
121311435 5274 Embryophyte View MSA
123348731 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain