Gene : Solyc11g011240.1 S. lycopersicum ITAG2.4
Defline:  (1 of 7) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Description:  Geranylgeranyl pyrophosphate synthase 1 (AHRD V1 ***- Q1A7T0_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase
Genomic Order:  520 Name:  ? Solyc11g011240.1
Secondary Identifier:  ? PAC:36152654
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-5120 Solanum lycopersicum pathologic  
Slycopersicum PWY-5910 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g011240.1 0.5kb upstream 0.5kb upstream 1598 true SL2.50ch11: 4288844-4290441 Solanum lycopersicum
Solyc11g011240.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 4288844-4289343 Solanum lycopersicum
Solyc11g011240.1 0.5kb downstream 0.5kb downstream 1598 true SL2.50ch11: 4289344-4290941 Solanum lycopersicum
Solyc11g011240.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 4290442-4290941 Solanum lycopersicum
Solyc11g011240.1 1.0kb upstream 1.0kb upstream 2098 true SL2.50ch11: 4288344-4290441 Solanum lycopersicum
Solyc11g011240.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 4288344-4289343 Solanum lycopersicum
Solyc11g011240.1 1.0kb downstream 1.0kb downstream 2098 true SL2.50ch11: 4289344-4291441 Solanum lycopersicum
Solyc11g011240.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 4290442-4291441 Solanum lycopersicum
Solyc11g011240.1 2.0kb upstream 2.0kb upstream 3098 true SL2.50ch11: 4287344-4290441 Solanum lycopersicum
Solyc11g011240.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 4287344-4289343 Solanum lycopersicum
Solyc11g011240.1 2.0kb downstream 2.0kb downstream 3098 true SL2.50ch11: 4289344-4292441 Solanum lycopersicum
Solyc11g011240.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 4290442-4292441 Solanum lycopersicum
Solyc11g011240.1 5.0kb upstream 5.0kb upstream 6098 true SL2.50ch11: 4284344-4290441 Solanum lycopersicum
Solyc11g011240.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 4284344-4289343 Solanum lycopersicum
Solyc11g011240.1 5.0kb downstream 5.0kb downstream 6098 true SL2.50ch11: 4289344-4295441 Solanum lycopersicum
Solyc11g011240.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 4290442-4295441 Solanum lycopersicum
Solyc11g011240.1 10.0kb upstream 10.0kb upstream 11098 true SL2.50ch11: 4279344-4290441 Solanum lycopersicum
Solyc11g011240.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 4279344-4289343 Solanum lycopersicum
Solyc11g011240.1 10.0kb downstream 10.0kb downstream 11098 true SL2.50ch11: 4289344-4300441 Solanum lycopersicum
Solyc11g011240.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 4290442-4300441 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466928 5263 Asterids View MSA
123745518 5271 Pentapetalae View MSA
122795597 5272 Eudicot View MSA
122051071 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain