Gene : Solyc11g045160.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR16166//PTHR16166:SF87 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 // SUBFAMILY NOT NAMED Description:  Vacuolar sorting-associated protein (AHRD V1 *-*- C0NJR3_AJECG)
Genomic Order:  1310 Name:  ? Solyc11g045160.1
Secondary Identifier:  ? PAC:36153452
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc11g045160.1 0.5kb upstream 0.5kb upstream 45327 true SL2.50ch11: 31540177-31585503 Solanum lycopersicum
Solyc11g045160.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch11: 31585004-31585503 Solanum lycopersicum
Solyc11g045160.1 0.5kb downstream 0.5kb downstream 45327 true SL2.50ch11: 31539677-31585003 Solanum lycopersicum
Solyc11g045160.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch11: 31539677-31540176 Solanum lycopersicum
Solyc11g045160.1 1.0kb upstream 1.0kb upstream 45827 true SL2.50ch11: 31540177-31586003 Solanum lycopersicum
Solyc11g045160.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch11: 31585004-31586003 Solanum lycopersicum
Solyc11g045160.1 1.0kb downstream 1.0kb downstream 45827 true SL2.50ch11: 31539177-31585003 Solanum lycopersicum
Solyc11g045160.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch11: 31539177-31540176 Solanum lycopersicum
Solyc11g045160.1 2.0kb upstream 2.0kb upstream 46827 true SL2.50ch11: 31540177-31587003 Solanum lycopersicum
Solyc11g045160.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch11: 31585004-31587003 Solanum lycopersicum
Solyc11g045160.1 2.0kb downstream 2.0kb downstream 46827 true SL2.50ch11: 31538177-31585003 Solanum lycopersicum
Solyc11g045160.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch11: 31538177-31540176 Solanum lycopersicum
Solyc11g045160.1 5.0kb upstream 5.0kb upstream 49827 true SL2.50ch11: 31540177-31590003 Solanum lycopersicum
Solyc11g045160.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch11: 31585004-31590003 Solanum lycopersicum
Solyc11g045160.1 5.0kb downstream 5.0kb downstream 49827 true SL2.50ch11: 31535177-31585003 Solanum lycopersicum
Solyc11g045160.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch11: 31535177-31540176 Solanum lycopersicum
Solyc11g045160.1 10.0kb upstream 10.0kb upstream 54827 true SL2.50ch11: 31540177-31595003 Solanum lycopersicum
Solyc11g045160.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch11: 31585004-31595003 Solanum lycopersicum
Solyc11g045160.1 10.0kb downstream 10.0kb downstream 54827 true SL2.50ch11: 31530177-31585003 Solanum lycopersicum
Solyc11g045160.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch11: 31530177-31540176 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479022 5263 Asterids View MSA
123741349 5271 Pentapetalae View MSA
122793853 5272 Eudicot View MSA
122042276 5273 Angiosperm View MSA
121346115 5274 Embryophyte View MSA
123424266 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain