Gene : Solyc00g030210.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 2.4.1.129 - Peptidoglycan glycosyltransferase / PG-II Description:  Ribosomal RNA small subunit methyltransferase H (AHRD V1 *--- RSMH_RALME); contains Interpro domain(s) IPR001460 Penicillin-binding protein, transpeptidase
Genomic Order:  404 Name:  ? Solyc00g030210.1
Secondary Identifier:  ? PAC:36127990
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g030210.1 0.5kb upstream 0.5kb upstream 5164 true SL2.50ch00: 12586733-12591896 Solanum lycopersicum
Solyc00g030210.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 12586733-12587232 Solanum lycopersicum
Solyc00g030210.1 0.5kb downstream 0.5kb downstream 5164 true SL2.50ch00: 12587233-12592396 Solanum lycopersicum
Solyc00g030210.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 12591897-12592396 Solanum lycopersicum
Solyc00g030210.1 1.0kb upstream 1.0kb upstream 5664 true SL2.50ch00: 12586233-12591896 Solanum lycopersicum
Solyc00g030210.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 12586233-12587232 Solanum lycopersicum
Solyc00g030210.1 1.0kb downstream 1.0kb downstream 5664 true SL2.50ch00: 12587233-12592896 Solanum lycopersicum
Solyc00g030210.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 12591897-12592896 Solanum lycopersicum
Solyc00g030210.1 2.0kb upstream 2.0kb upstream 6664 true SL2.50ch00: 12585233-12591896 Solanum lycopersicum
Solyc00g030210.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 12585233-12587232 Solanum lycopersicum
Solyc00g030210.1 2.0kb downstream 2.0kb downstream 6664 true SL2.50ch00: 12587233-12593896 Solanum lycopersicum
Solyc00g030210.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 12591897-12593896 Solanum lycopersicum
Solyc00g030210.1 5.0kb upstream 5.0kb upstream 9664 true SL2.50ch00: 12582233-12591896 Solanum lycopersicum
Solyc00g030210.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 12582233-12587232 Solanum lycopersicum
Solyc00g030210.1 5.0kb downstream 5.0kb downstream 9664 true SL2.50ch00: 12587233-12596896 Solanum lycopersicum
Solyc00g030210.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 12591897-12596896 Solanum lycopersicum
Solyc00g030210.1 10.0kb upstream 10.0kb upstream 14664 true SL2.50ch00: 12577233-12591896 Solanum lycopersicum
Solyc00g030210.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 12577233-12587232 Solanum lycopersicum
Solyc00g030210.1 10.0kb downstream 10.0kb downstream 14664 true SL2.50ch00: 12587233-12601896 Solanum lycopersicum
Solyc00g030210.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 12591897-12601896 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121692053 5273 Angiosperm Singleton cluster - no MSA
121364057 5263 Asterids Singleton cluster - no MSA
123648124 5271 Pentapetalae Singleton cluster - no MSA
122682065 5272 Eudicot Singleton cluster - no MSA
120963886 5274 Embryophyte Singleton cluster - no MSA
123004208 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain