Gene : Solyc00g028110.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PF05954 - Phage late control gene D protein (GPD) (Phage_GPD) Description:  Rhs element Vgr protein (AHRD V1 **-- A6V8B8_PSEA7); contains Interpro domain(s) IPR017847 Rhs element Vgr protein, subgroup
Genomic Order:  382 Name:  ? Solyc00g028110.1
Secondary Identifier:  ? PAC:36127996
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc00g028110.1 0.5kb upstream 0.5kb upstream 1325 true SL2.50ch00: 12453253-12454577 Solanum lycopersicum
Solyc00g028110.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch00: 12453253-12453752 Solanum lycopersicum
Solyc00g028110.1 0.5kb downstream 0.5kb downstream 1325 true SL2.50ch00: 12453753-12455077 Solanum lycopersicum
Solyc00g028110.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch00: 12454578-12455077 Solanum lycopersicum
Solyc00g028110.1 1.0kb upstream 1.0kb upstream 1825 true SL2.50ch00: 12452753-12454577 Solanum lycopersicum
Solyc00g028110.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch00: 12452753-12453752 Solanum lycopersicum
Solyc00g028110.1 1.0kb downstream 1.0kb downstream 1825 true SL2.50ch00: 12453753-12455577 Solanum lycopersicum
Solyc00g028110.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch00: 12454578-12455577 Solanum lycopersicum
Solyc00g028110.1 2.0kb upstream 2.0kb upstream 2825 true SL2.50ch00: 12451753-12454577 Solanum lycopersicum
Solyc00g028110.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch00: 12451753-12453752 Solanum lycopersicum
Solyc00g028110.1 2.0kb downstream 2.0kb downstream 2825 true SL2.50ch00: 12453753-12456577 Solanum lycopersicum
Solyc00g028110.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch00: 12454578-12456577 Solanum lycopersicum
Solyc00g028110.1 5.0kb upstream 5.0kb upstream 5825 true SL2.50ch00: 12448753-12454577 Solanum lycopersicum
Solyc00g028110.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch00: 12448753-12453752 Solanum lycopersicum
Solyc00g028110.1 5.0kb downstream 5.0kb downstream 5825 true SL2.50ch00: 12453753-12459577 Solanum lycopersicum
Solyc00g028110.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch00: 12454578-12459577 Solanum lycopersicum
Solyc00g028110.1 10.0kb upstream 10.0kb upstream 10825 true SL2.50ch00: 12443753-12454577 Solanum lycopersicum
Solyc00g028110.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch00: 12443753-12453752 Solanum lycopersicum
Solyc00g028110.1 10.0kb downstream 10.0kb downstream 10825 true SL2.50ch00: 12453753-12464577 Solanum lycopersicum
Solyc00g028110.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch00: 12454578-12464577 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782611 5273 Angiosperm View MSA
121364061 5263 Asterids Singleton cluster - no MSA
123753339 5271 Pentapetalae View MSA
122775064 5272 Eudicot View MSA
121054119 5274 Embryophyte View MSA
123094115 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain