Gene : AUR62009961 C. quinoa v1.0
Defline:  (1 of 3) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  4
Name:  ? AUR62009961 Secondary Identifier:  ? PAC:36322258
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cquinoa TRNA-CHARGING-PWY Chenopodium quinoa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AUR62009961 0.5kb upstream 0.5kb upstream 7463 true C_Quinoa_Scaffold_1257: 262919-270381 Chenopodium quinoa
AUR62009961 0.5kb upstream 0.5kb upstream 500 false C_Quinoa_Scaffold_1257: 269882-270381 Chenopodium quinoa
AUR62009961 0.5kb downstream 0.5kb downstream 7463 true C_Quinoa_Scaffold_1257: 262419-269881 Chenopodium quinoa
AUR62009961 0.5kb downstream 0.5kb downstream 500 false C_Quinoa_Scaffold_1257: 262419-262918 Chenopodium quinoa
AUR62009961 1.0kb upstream 1.0kb upstream 7963 true C_Quinoa_Scaffold_1257: 262919-270881 Chenopodium quinoa
AUR62009961 1.0kb upstream 1.0kb upstream 1000 false C_Quinoa_Scaffold_1257: 269882-270881 Chenopodium quinoa
AUR62009961 1.0kb downstream 1.0kb downstream 7963 true C_Quinoa_Scaffold_1257: 261919-269881 Chenopodium quinoa
AUR62009961 1.0kb downstream 1.0kb downstream 1000 false C_Quinoa_Scaffold_1257: 261919-262918 Chenopodium quinoa
AUR62009961 2.0kb upstream 2.0kb upstream 8963 true C_Quinoa_Scaffold_1257: 262919-271881 Chenopodium quinoa
AUR62009961 2.0kb upstream 2.0kb upstream 2000 false C_Quinoa_Scaffold_1257: 269882-271881 Chenopodium quinoa
AUR62009961 2.0kb downstream 2.0kb downstream 8963 true C_Quinoa_Scaffold_1257: 260919-269881 Chenopodium quinoa
AUR62009961 2.0kb downstream 2.0kb downstream 2000 false C_Quinoa_Scaffold_1257: 260919-262918 Chenopodium quinoa
AUR62009961 5.0kb upstream 5.0kb upstream 11963 true C_Quinoa_Scaffold_1257: 262919-274881 Chenopodium quinoa
AUR62009961 5.0kb upstream 5.0kb upstream 5000 false C_Quinoa_Scaffold_1257: 269882-274881 Chenopodium quinoa
AUR62009961 5.0kb downstream 5.0kb downstream 11963 true C_Quinoa_Scaffold_1257: 257919-269881 Chenopodium quinoa
AUR62009961 5.0kb downstream 5.0kb downstream 5000 false C_Quinoa_Scaffold_1257: 257919-262918 Chenopodium quinoa
AUR62009961 10.0kb upstream 10.0kb upstream 16963 true C_Quinoa_Scaffold_1257: 262919-279881 Chenopodium quinoa
AUR62009961 10.0kb upstream 10.0kb upstream 10000 false C_Quinoa_Scaffold_1257: 269882-279881 Chenopodium quinoa
AUR62009961 10.0kb downstream 10.0kb downstream 16963 true C_Quinoa_Scaffold_1257: 252919-269881 Chenopodium quinoa
AUR62009961 10.0kb downstream 10.0kb downstream 10000 false C_Quinoa_Scaffold_1257: 252919-262918 Chenopodium quinoa

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain