Gene : Phvul.001G047900 P. vulgaris v2.1
Defline:  (1 of 15) PF07714//PF13947 - Protein tyrosine kinase (Pkinase_Tyr) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  484
Name:  ? Phvul.001G047900 Secondary Identifier:  ? PAC:37168321
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G047900 0.5kb upstream 0.5kb upstream 4487 true Chr01: 5042113-5046599 Phaseolus vulgaris
Phvul.001G047900 0.5kb upstream 0.5kb upstream 500 false Chr01: 5046100-5046599 Phaseolus vulgaris
Phvul.001G047900 0.5kb downstream 0.5kb downstream 4487 true Chr01: 5041613-5046099 Phaseolus vulgaris
Phvul.001G047900 0.5kb downstream 0.5kb downstream 500 false Chr01: 5041613-5042112 Phaseolus vulgaris
Phvul.001G047900 1.0kb upstream 1.0kb upstream 4987 true Chr01: 5042113-5047099 Phaseolus vulgaris
Phvul.001G047900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5046100-5047099 Phaseolus vulgaris
Phvul.001G047900 1.0kb downstream 1.0kb downstream 4987 true Chr01: 5041113-5046099 Phaseolus vulgaris
Phvul.001G047900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5041113-5042112 Phaseolus vulgaris
Phvul.001G047900 2.0kb upstream 2.0kb upstream 5987 true Chr01: 5042113-5048099 Phaseolus vulgaris
Phvul.001G047900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5046100-5048099 Phaseolus vulgaris
Phvul.001G047900 2.0kb downstream 2.0kb downstream 5987 true Chr01: 5040113-5046099 Phaseolus vulgaris
Phvul.001G047900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5040113-5042112 Phaseolus vulgaris
Phvul.001G047900 5.0kb upstream 5.0kb upstream 8987 true Chr01: 5042113-5051099 Phaseolus vulgaris
Phvul.001G047900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5046100-5051099 Phaseolus vulgaris
Phvul.001G047900 5.0kb downstream 5.0kb downstream 8987 true Chr01: 5037113-5046099 Phaseolus vulgaris
Phvul.001G047900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5037113-5042112 Phaseolus vulgaris
Phvul.001G047900 10.0kb upstream 10.0kb upstream 13987 true Chr01: 5042113-5056099 Phaseolus vulgaris
Phvul.001G047900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5046100-5056099 Phaseolus vulgaris
Phvul.001G047900 10.0kb downstream 10.0kb downstream 13987 true Chr01: 5032113-5046099 Phaseolus vulgaris
Phvul.001G047900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5032113-5042112 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.835703 0.0 2.92425    
cufflinks 0.502378 0.0 1.84834    
cufflinks 8.49861 0.0 23.1228   High
cufflinks 0.276168 0.0 1.07633 Low  
cufflinks 0.472375 0.0 1.75862 Low  
cufflinks 2.33553 0.0 7.29535   High
cufflinks 0.0442178 0.0 0.200568 Low Low
cufflinks 0.134933 0.0 0.548568 Low  
cufflinks 0.119753 0.0 0.496717 Low  
cufflinks 1.80903 0.0 5.8202    
cufflinks 0.432899 0.0 1.62219 Low  

0 Strain