Gene : Phvul.001G048050 P. vulgaris v2.1
Defline:  (1 of 13) PF00069//PF13947 - Protein kinase domain (Pkinase) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  485
Name:  ? Phvul.001G048050 Secondary Identifier:  ? PAC:37171260
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G048050 0.5kb upstream 0.5kb upstream 12528 true Chr01: 5065951-5078478 Phaseolus vulgaris
Phvul.001G048050 0.5kb upstream 0.5kb upstream 500 false Chr01: 5077979-5078478 Phaseolus vulgaris
Phvul.001G048050 0.5kb downstream 0.5kb downstream 12528 true Chr01: 5065451-5077978 Phaseolus vulgaris
Phvul.001G048050 0.5kb downstream 0.5kb downstream 500 false Chr01: 5065451-5065950 Phaseolus vulgaris
Phvul.001G048050 1.0kb upstream 1.0kb upstream 13028 true Chr01: 5065951-5078978 Phaseolus vulgaris
Phvul.001G048050 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5077979-5078978 Phaseolus vulgaris
Phvul.001G048050 1.0kb downstream 1.0kb downstream 13028 true Chr01: 5064951-5077978 Phaseolus vulgaris
Phvul.001G048050 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5064951-5065950 Phaseolus vulgaris
Phvul.001G048050 2.0kb upstream 2.0kb upstream 14028 true Chr01: 5065951-5079978 Phaseolus vulgaris
Phvul.001G048050 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5077979-5079978 Phaseolus vulgaris
Phvul.001G048050 2.0kb downstream 2.0kb downstream 14028 true Chr01: 5063951-5077978 Phaseolus vulgaris
Phvul.001G048050 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5063951-5065950 Phaseolus vulgaris
Phvul.001G048050 5.0kb upstream 5.0kb upstream 17028 true Chr01: 5065951-5082978 Phaseolus vulgaris
Phvul.001G048050 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5077979-5082978 Phaseolus vulgaris
Phvul.001G048050 5.0kb downstream 5.0kb downstream 17028 true Chr01: 5060951-5077978 Phaseolus vulgaris
Phvul.001G048050 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5060951-5065950 Phaseolus vulgaris
Phvul.001G048050 10.0kb upstream 10.0kb upstream 22028 true Chr01: 5065951-5087978 Phaseolus vulgaris
Phvul.001G048050 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5077979-5087978 Phaseolus vulgaris
Phvul.001G048050 10.0kb downstream 10.0kb downstream 22028 true Chr01: 5055951-5077978 Phaseolus vulgaris
Phvul.001G048050 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5055951-5065950 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.15617 0.0 9.31884   High
cufflinks 1.1438 0.0 5.89832    
cufflinks 0.662623 0.0 3.87651    
cufflinks 0.585166 0.0 3.60101    
cufflinks 0.485073 0.0 3.47765 Low  
cufflinks 0.726938 0.0 4.21472    
cufflinks 0.219882 0.0 1.65069 Low  
cufflinks 0.111342 0.0 0.460802 Low Low
cufflinks 0.0641367 0.0 0.294952 Low Low
cufflinks 1.16963 0.0 5.95972    
cufflinks 1.2138 0.0 6.20239    

0 Strain