Gene : Phvul.001G048600 P. vulgaris v2.1
Defline:  (1 of 13) PF00069//PF13947 - Protein kinase domain (Pkinase) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  490
Name:  ? Phvul.001G048600 Secondary Identifier:  ? PAC:37171121
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G048600 0.5kb upstream 0.5kb upstream 3405 true Chr01: 5137894-5141298 Phaseolus vulgaris
Phvul.001G048600 0.5kb upstream 0.5kb upstream 500 false Chr01: 5140799-5141298 Phaseolus vulgaris
Phvul.001G048600 0.5kb downstream 0.5kb downstream 3405 true Chr01: 5137394-5140798 Phaseolus vulgaris
Phvul.001G048600 0.5kb downstream 0.5kb downstream 500 false Chr01: 5137394-5137893 Phaseolus vulgaris
Phvul.001G048600 1.0kb upstream 1.0kb upstream 3905 true Chr01: 5137894-5141798 Phaseolus vulgaris
Phvul.001G048600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5140799-5141798 Phaseolus vulgaris
Phvul.001G048600 1.0kb downstream 1.0kb downstream 3905 true Chr01: 5136894-5140798 Phaseolus vulgaris
Phvul.001G048600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5136894-5137893 Phaseolus vulgaris
Phvul.001G048600 2.0kb upstream 2.0kb upstream 4905 true Chr01: 5137894-5142798 Phaseolus vulgaris
Phvul.001G048600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5140799-5142798 Phaseolus vulgaris
Phvul.001G048600 2.0kb downstream 2.0kb downstream 4905 true Chr01: 5135894-5140798 Phaseolus vulgaris
Phvul.001G048600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5135894-5137893 Phaseolus vulgaris
Phvul.001G048600 5.0kb upstream 5.0kb upstream 7905 true Chr01: 5137894-5145798 Phaseolus vulgaris
Phvul.001G048600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5140799-5145798 Phaseolus vulgaris
Phvul.001G048600 5.0kb downstream 5.0kb downstream 7905 true Chr01: 5132894-5140798 Phaseolus vulgaris
Phvul.001G048600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5132894-5137893 Phaseolus vulgaris
Phvul.001G048600 10.0kb upstream 10.0kb upstream 12905 true Chr01: 5137894-5150798 Phaseolus vulgaris
Phvul.001G048600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5140799-5150798 Phaseolus vulgaris
Phvul.001G048600 10.0kb downstream 10.0kb downstream 12905 true Chr01: 5127894-5140798 Phaseolus vulgaris
Phvul.001G048600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5127894-5137893 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.37462 0.0 6.73373    
cufflinks 0.794115 0.0 4.5329    
cufflinks 14.12 0.0 47.2102   High
cufflinks 0.797644 0.0 4.75665    
cufflinks 1.29407 0.0 6.6077    
cufflinks 1.50344 0.0 8.9015    
cufflinks 0.563368 0.0 4.01031    
cufflinks 0.285468 0.0 2.0439 Low Low
cufflinks 0.127807 0.0 1.12001 Low Low
cufflinks 2.41994 0.0 10.4426    
cufflinks 1.89237 0.0 6.74888    

0 Strain