Gene : Phvul.001G034200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11850:SF92 - HOMEOBOX PROTEIN ATH1 Genomic Order:  345
Name:  ? Phvul.001G034200 Secondary Identifier:  ? PAC:37169952
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G034200 0.5kb upstream 0.5kb upstream 4247 true Chr01: 3219787-3224033 Phaseolus vulgaris
Phvul.001G034200 0.5kb upstream 0.5kb upstream 500 false Chr01: 3223534-3224033 Phaseolus vulgaris
Phvul.001G034200 0.5kb downstream 0.5kb downstream 4247 true Chr01: 3219287-3223533 Phaseolus vulgaris
Phvul.001G034200 0.5kb downstream 0.5kb downstream 500 false Chr01: 3219287-3219786 Phaseolus vulgaris
Phvul.001G034200 1.0kb upstream 1.0kb upstream 4747 true Chr01: 3219787-3224533 Phaseolus vulgaris
Phvul.001G034200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 3223534-3224533 Phaseolus vulgaris
Phvul.001G034200 1.0kb downstream 1.0kb downstream 4747 true Chr01: 3218787-3223533 Phaseolus vulgaris
Phvul.001G034200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 3218787-3219786 Phaseolus vulgaris
Phvul.001G034200 2.0kb upstream 2.0kb upstream 5747 true Chr01: 3219787-3225533 Phaseolus vulgaris
Phvul.001G034200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 3223534-3225533 Phaseolus vulgaris
Phvul.001G034200 2.0kb downstream 2.0kb downstream 5747 true Chr01: 3217787-3223533 Phaseolus vulgaris
Phvul.001G034200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 3217787-3219786 Phaseolus vulgaris
Phvul.001G034200 5.0kb upstream 5.0kb upstream 8747 true Chr01: 3219787-3228533 Phaseolus vulgaris
Phvul.001G034200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 3223534-3228533 Phaseolus vulgaris
Phvul.001G034200 5.0kb downstream 5.0kb downstream 8747 true Chr01: 3214787-3223533 Phaseolus vulgaris
Phvul.001G034200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 3214787-3219786 Phaseolus vulgaris
Phvul.001G034200 10.0kb upstream 10.0kb upstream 13747 true Chr01: 3219787-3233533 Phaseolus vulgaris
Phvul.001G034200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 3223534-3233533 Phaseolus vulgaris
Phvul.001G034200 10.0kb downstream 10.0kb downstream 13747 true Chr01: 3209787-3223533 Phaseolus vulgaris
Phvul.001G034200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 3209787-3219786 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026468 5273 Angiosperm View MSA
122311728 5265 Fabidae View MSA
124067667 5270 Rosid View MSA
123747040 5271 Pentapetalae View MSA
122793923 5272 Eudicot View MSA
121296345 5274 Embryophyte View MSA
123334524 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.755875 0.0 2.61807    
cufflinks 0.877301 0.0 2.98469    
cufflinks 0.074466 0.0 0.31266 Low  
cufflinks 0.524003 0.0 1.89249 Low  
cufflinks 1.18824 0.0 3.93635    
cufflinks 1.82373 0.0 5.71155   High
cufflinks 0.0166397 0.0 0.0814933 Low Low
cufflinks 0.0118344 0.0 0.0599203 Low Low
cufflinks 0.0548094 0.0 0.238034 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.33974 0.0 4.36839    

0 Strain