Gene : Phvul.001G039100 P. vulgaris v2.1
Defline:  (1 of 1) K18787 - thermospermine synthase (ACL5) Genomic Order:  453
Name:  ? Phvul.001G039100 Secondary Identifier:  ? PAC:37170069
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris BSUBPOLYAMSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G039100 0.5kb upstream 0.5kb upstream 5223 true Chr01: 4510889-4516111 Phaseolus vulgaris
Phvul.001G039100 0.5kb upstream 0.5kb upstream 500 false Chr01: 4515612-4516111 Phaseolus vulgaris
Phvul.001G039100 0.5kb downstream 0.5kb downstream 5223 true Chr01: 4510389-4515611 Phaseolus vulgaris
Phvul.001G039100 0.5kb downstream 0.5kb downstream 500 false Chr01: 4510389-4510888 Phaseolus vulgaris
Phvul.001G039100 1.0kb upstream 1.0kb upstream 5723 true Chr01: 4510889-4516611 Phaseolus vulgaris
Phvul.001G039100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 4515612-4516611 Phaseolus vulgaris
Phvul.001G039100 1.0kb downstream 1.0kb downstream 5723 true Chr01: 4509889-4515611 Phaseolus vulgaris
Phvul.001G039100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 4509889-4510888 Phaseolus vulgaris
Phvul.001G039100 2.0kb upstream 2.0kb upstream 6723 true Chr01: 4510889-4517611 Phaseolus vulgaris
Phvul.001G039100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 4515612-4517611 Phaseolus vulgaris
Phvul.001G039100 2.0kb downstream 2.0kb downstream 6723 true Chr01: 4508889-4515611 Phaseolus vulgaris
Phvul.001G039100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 4508889-4510888 Phaseolus vulgaris
Phvul.001G039100 5.0kb upstream 5.0kb upstream 9723 true Chr01: 4510889-4520611 Phaseolus vulgaris
Phvul.001G039100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 4515612-4520611 Phaseolus vulgaris
Phvul.001G039100 5.0kb downstream 5.0kb downstream 9723 true Chr01: 4505889-4515611 Phaseolus vulgaris
Phvul.001G039100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 4505889-4510888 Phaseolus vulgaris
Phvul.001G039100 10.0kb upstream 10.0kb upstream 14723 true Chr01: 4510889-4525611 Phaseolus vulgaris
Phvul.001G039100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 4515612-4525611 Phaseolus vulgaris
Phvul.001G039100 10.0kb downstream 10.0kb downstream 14723 true Chr01: 4500889-4515611 Phaseolus vulgaris
Phvul.001G039100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 4500889-4510888 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299011 5265 Fabidae View MSA
124068940 5270 Rosid View MSA
123748388 5271 Pentapetalae View MSA
122794179 5272 Eudicot View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.44436 0.0 7.7144    
cufflinks 4.47239 0.0 13.2249    
cufflinks 6.01129 0.0 17.1601    
cufflinks 1.61642 0.0 5.41154   Low
cufflinks 3.70637 0.0 11.3495    
cufflinks 2.59719 0.0 8.16328    
cufflinks 9.37762 0.0 25.7366   High
cufflinks 12.2332 0.0 32.7488   High
cufflinks 10.3321 0.0 28.1514   High
cufflinks 1.45104 0.0 4.9049   Low
cufflinks 5.02594 0.0 14.784    

0 Strain