Gene : Phvul.001G025800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23201//PTHR23201:SF4 - EXTENSIN, PROLINE-RICH PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  261
Name:  ? Phvul.001G025800 Secondary Identifier:  ? PAC:37168327
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G025800 0.5kb upstream 0.5kb upstream 2086 true Chr01: 2254343-2256428 Phaseolus vulgaris
Phvul.001G025800 0.5kb upstream 0.5kb upstream 500 false Chr01: 2255929-2256428 Phaseolus vulgaris
Phvul.001G025800 0.5kb downstream 0.5kb downstream 2086 true Chr01: 2253843-2255928 Phaseolus vulgaris
Phvul.001G025800 0.5kb downstream 0.5kb downstream 500 false Chr01: 2253843-2254342 Phaseolus vulgaris
Phvul.001G025800 1.0kb upstream 1.0kb upstream 2586 true Chr01: 2254343-2256928 Phaseolus vulgaris
Phvul.001G025800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2255929-2256928 Phaseolus vulgaris
Phvul.001G025800 1.0kb downstream 1.0kb downstream 2586 true Chr01: 2253343-2255928 Phaseolus vulgaris
Phvul.001G025800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2253343-2254342 Phaseolus vulgaris
Phvul.001G025800 2.0kb upstream 2.0kb upstream 3586 true Chr01: 2254343-2257928 Phaseolus vulgaris
Phvul.001G025800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2255929-2257928 Phaseolus vulgaris
Phvul.001G025800 2.0kb downstream 2.0kb downstream 3586 true Chr01: 2252343-2255928 Phaseolus vulgaris
Phvul.001G025800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2252343-2254342 Phaseolus vulgaris
Phvul.001G025800 5.0kb upstream 5.0kb upstream 6586 true Chr01: 2254343-2260928 Phaseolus vulgaris
Phvul.001G025800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2255929-2260928 Phaseolus vulgaris
Phvul.001G025800 5.0kb downstream 5.0kb downstream 6586 true Chr01: 2249343-2255928 Phaseolus vulgaris
Phvul.001G025800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2249343-2254342 Phaseolus vulgaris
Phvul.001G025800 10.0kb upstream 10.0kb upstream 11586 true Chr01: 2254343-2265928 Phaseolus vulgaris
Phvul.001G025800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2255929-2265928 Phaseolus vulgaris
Phvul.001G025800 10.0kb downstream 10.0kb downstream 11586 true Chr01: 2244343-2255928 Phaseolus vulgaris
Phvul.001G025800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2244343-2254342 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311621 5265 Fabidae View MSA
124074083 5270 Rosid View MSA
123750435 5271 Pentapetalae View MSA
122791253 5272 Eudicot View MSA
122044591 5273 Angiosperm View MSA
121310316 5274 Embryophyte View MSA
123347833 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.1024 0.0 69.7835    
cufflinks 259.555 0.0 705.72 High  
cufflinks 35.8838 0.0 96.3759    
cufflinks 238.575 0.0 643.719 High  
cufflinks 132.65 0.0 344.636 High  
cufflinks 97.6891 0.0 252.565 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.110594 0.0 0.519147 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 7.62956 0.0 24.1384    
cufflinks 120.607 0.0 312.48 High  

0 Strain