Gene : Phvul.001G027800 P. vulgaris v2.1
Defline:  (1 of 2) PF15811 - Small VCP/p97-interacting protein (SVIP) Genomic Order:  280
Name:  ? Phvul.001G027800 Secondary Identifier:  ? PAC:37170871
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G027800 0.5kb upstream 0.5kb upstream 3150 true Chr01: 2487737-2490886 Phaseolus vulgaris
Phvul.001G027800 0.5kb upstream 0.5kb upstream 500 false Chr01: 2490387-2490886 Phaseolus vulgaris
Phvul.001G027800 0.5kb downstream 0.5kb downstream 3150 true Chr01: 2487237-2490386 Phaseolus vulgaris
Phvul.001G027800 0.5kb downstream 0.5kb downstream 500 false Chr01: 2487237-2487736 Phaseolus vulgaris
Phvul.001G027800 1.0kb upstream 1.0kb upstream 3650 true Chr01: 2487737-2491386 Phaseolus vulgaris
Phvul.001G027800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2490387-2491386 Phaseolus vulgaris
Phvul.001G027800 1.0kb downstream 1.0kb downstream 3650 true Chr01: 2486737-2490386 Phaseolus vulgaris
Phvul.001G027800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2486737-2487736 Phaseolus vulgaris
Phvul.001G027800 2.0kb upstream 2.0kb upstream 4650 true Chr01: 2487737-2492386 Phaseolus vulgaris
Phvul.001G027800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2490387-2492386 Phaseolus vulgaris
Phvul.001G027800 2.0kb downstream 2.0kb downstream 4650 true Chr01: 2485737-2490386 Phaseolus vulgaris
Phvul.001G027800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2485737-2487736 Phaseolus vulgaris
Phvul.001G027800 5.0kb upstream 5.0kb upstream 7650 true Chr01: 2487737-2495386 Phaseolus vulgaris
Phvul.001G027800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2490387-2495386 Phaseolus vulgaris
Phvul.001G027800 5.0kb downstream 5.0kb downstream 7650 true Chr01: 2482737-2490386 Phaseolus vulgaris
Phvul.001G027800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2482737-2487736 Phaseolus vulgaris
Phvul.001G027800 10.0kb upstream 10.0kb upstream 12650 true Chr01: 2487737-2500386 Phaseolus vulgaris
Phvul.001G027800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2490387-2500386 Phaseolus vulgaris
Phvul.001G027800 10.0kb downstream 10.0kb downstream 12650 true Chr01: 2477737-2490386 Phaseolus vulgaris
Phvul.001G027800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2477737-2487736 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303094 5265 Fabidae View MSA
124072896 5270 Rosid View MSA
123736483 5271 Pentapetalae View MSA
122789828 5272 Eudicot View MSA
122050042 5273 Angiosperm View MSA
121311703 5274 Embryophyte View MSA
123348966 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.7101 0.0 138.299 High High
cufflinks 20.1834 0.0 56.9878    
cufflinks 18.3139 0.0 52.2468    
cufflinks 25.8395 0.0 71.6035    
cufflinks 28.8244 0.0 79.5133    
cufflinks 11.2966 0.0 33.938   Low
cufflinks 24.2775 0.0 67.1626    
cufflinks 22.3836 0.0 62.1782    
cufflinks 20.7156 0.0 58.0871    
cufflinks 28.2743 0.0 77.8644    
cufflinks 34.6214 0.0 93.5429 High  

0 Strain