Gene : Phvul.001G031600 P. vulgaris v2.1
Defline:  (1 of 4) 1.14.13.132//1.14.99.7 - Squalene monooxygenase / Squalene epoxidase Genomic Order:  318
Name:  ? Phvul.001G031600 Secondary Identifier:  ? PAC:37167934
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-2541 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5670 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G031600 0.5kb upstream 0.5kb upstream 5219 true Chr01: 2880028-2885246 Phaseolus vulgaris
Phvul.001G031600 0.5kb upstream 0.5kb upstream 500 false Chr01: 2880028-2880527 Phaseolus vulgaris
Phvul.001G031600 0.5kb downstream 0.5kb downstream 5219 true Chr01: 2880528-2885746 Phaseolus vulgaris
Phvul.001G031600 0.5kb downstream 0.5kb downstream 500 false Chr01: 2885247-2885746 Phaseolus vulgaris
Phvul.001G031600 1.0kb upstream 1.0kb upstream 5719 true Chr01: 2879528-2885246 Phaseolus vulgaris
Phvul.001G031600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2879528-2880527 Phaseolus vulgaris
Phvul.001G031600 1.0kb downstream 1.0kb downstream 5719 true Chr01: 2880528-2886246 Phaseolus vulgaris
Phvul.001G031600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2885247-2886246 Phaseolus vulgaris
Phvul.001G031600 2.0kb upstream 2.0kb upstream 6719 true Chr01: 2878528-2885246 Phaseolus vulgaris
Phvul.001G031600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2878528-2880527 Phaseolus vulgaris
Phvul.001G031600 2.0kb downstream 2.0kb downstream 6719 true Chr01: 2880528-2887246 Phaseolus vulgaris
Phvul.001G031600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2885247-2887246 Phaseolus vulgaris
Phvul.001G031600 5.0kb upstream 5.0kb upstream 9719 true Chr01: 2875528-2885246 Phaseolus vulgaris
Phvul.001G031600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2875528-2880527 Phaseolus vulgaris
Phvul.001G031600 5.0kb downstream 5.0kb downstream 9719 true Chr01: 2880528-2890246 Phaseolus vulgaris
Phvul.001G031600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2885247-2890246 Phaseolus vulgaris
Phvul.001G031600 10.0kb upstream 10.0kb upstream 14719 true Chr01: 2870528-2885246 Phaseolus vulgaris
Phvul.001G031600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2870528-2880527 Phaseolus vulgaris
Phvul.001G031600 10.0kb downstream 10.0kb downstream 14719 true Chr01: 2880528-2895246 Phaseolus vulgaris
Phvul.001G031600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2885247-2895246 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306242 5265 Fabidae View MSA
124072398 5270 Rosid View MSA
123747368 5271 Pentapetalae View MSA
122788930 5272 Eudicot View MSA
122042003 5273 Angiosperm View MSA
121344187 5274 Embryophyte View MSA
123428498 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.2896 0.0 109.168 High  
cufflinks 35.3601 0.0 92.605 High  
cufflinks 126.673 0.0 377.129 High High
cufflinks 115.392 0.0 338.165 High High
cufflinks 33.2574 0.0 86.8854 High  
cufflinks 116.754 0.0 343.303 High High
cufflinks 35.1573 0.0 92.2713 High  
cufflinks 121.684 0.0 361.904 High High
cufflinks 34.4808 0.0 90.2503 High  
cufflinks 10.5784 0.0 27.9182   Low
cufflinks 46.9897 0.0 125.45 High  

0 Strain