Gene : Phvul.001G017600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12956//PTHR12956:SF17 - ALKALINE CERAMIDASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  178
Name:  ? Phvul.001G017600 Secondary Identifier:  ? PAC:37168569
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G017600 0.5kb upstream 0.5kb upstream 4493 true Chr01: 1363165-1367657 Phaseolus vulgaris
Phvul.001G017600 0.5kb upstream 0.5kb upstream 500 false Chr01: 1363165-1363664 Phaseolus vulgaris
Phvul.001G017600 0.5kb downstream 0.5kb downstream 4493 true Chr01: 1363665-1368157 Phaseolus vulgaris
Phvul.001G017600 0.5kb downstream 0.5kb downstream 500 false Chr01: 1367658-1368157 Phaseolus vulgaris
Phvul.001G017600 1.0kb upstream 1.0kb upstream 4993 true Chr01: 1362665-1367657 Phaseolus vulgaris
Phvul.001G017600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 1362665-1363664 Phaseolus vulgaris
Phvul.001G017600 1.0kb downstream 1.0kb downstream 4993 true Chr01: 1363665-1368657 Phaseolus vulgaris
Phvul.001G017600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 1367658-1368657 Phaseolus vulgaris
Phvul.001G017600 2.0kb upstream 2.0kb upstream 5993 true Chr01: 1361665-1367657 Phaseolus vulgaris
Phvul.001G017600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 1361665-1363664 Phaseolus vulgaris
Phvul.001G017600 2.0kb downstream 2.0kb downstream 5993 true Chr01: 1363665-1369657 Phaseolus vulgaris
Phvul.001G017600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 1367658-1369657 Phaseolus vulgaris
Phvul.001G017600 5.0kb upstream 5.0kb upstream 8993 true Chr01: 1358665-1367657 Phaseolus vulgaris
Phvul.001G017600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 1358665-1363664 Phaseolus vulgaris
Phvul.001G017600 5.0kb downstream 5.0kb downstream 8993 true Chr01: 1363665-1372657 Phaseolus vulgaris
Phvul.001G017600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 1367658-1372657 Phaseolus vulgaris
Phvul.001G017600 10.0kb upstream 10.0kb upstream 13993 true Chr01: 1353665-1367657 Phaseolus vulgaris
Phvul.001G017600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 1353665-1363664 Phaseolus vulgaris
Phvul.001G017600 10.0kb downstream 10.0kb downstream 13993 true Chr01: 1363665-1377657 Phaseolus vulgaris
Phvul.001G017600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 1367658-1377657 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043522 5273 Angiosperm View MSA
122312163 5265 Fabidae View MSA
124064834 5270 Rosid View MSA
123741279 5271 Pentapetalae View MSA
122792528 5272 Eudicot View MSA
121343906 5274 Embryophyte View MSA
123379940 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88261 0.0 18.8412   Low
cufflinks 9.15481 0.0 24.4867    
cufflinks 8.79803 0.0 23.5839    
cufflinks 11.5059 0.0 30.3694   High
cufflinks 7.96571 0.0 21.6272    
cufflinks 8.69796 0.0 23.3537    
cufflinks 7.41518 0.0 20.1684    
cufflinks 7.89938 0.0 21.3277    
cufflinks 7.82137 0.0 21.1977    
cufflinks 7.55641 0.0 20.5422    
cufflinks 9.74875 0.0 26.0054   High

0 Strain