Gene : Phvul.001G001600 P. vulgaris v2.1
Defline:  (1 of 1) K07583 - tRNA pseudouridine synthase 10 [EC:5.4.99.-] (PUS10) Genomic Order:  13
Name:  ? Phvul.001G001600 Secondary Identifier:  ? PAC:37170316
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G001600 0.5kb upstream 0.5kb upstream 4977 true Chr01: 108327-113303 Phaseolus vulgaris
Phvul.001G001600 0.5kb upstream 0.5kb upstream 500 false Chr01: 108327-108826 Phaseolus vulgaris
Phvul.001G001600 0.5kb downstream 0.5kb downstream 4977 true Chr01: 108827-113803 Phaseolus vulgaris
Phvul.001G001600 0.5kb downstream 0.5kb downstream 500 false Chr01: 113304-113803 Phaseolus vulgaris
Phvul.001G001600 1.0kb upstream 1.0kb upstream 5477 true Chr01: 107827-113303 Phaseolus vulgaris
Phvul.001G001600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 107827-108826 Phaseolus vulgaris
Phvul.001G001600 1.0kb downstream 1.0kb downstream 5477 true Chr01: 108827-114303 Phaseolus vulgaris
Phvul.001G001600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 113304-114303 Phaseolus vulgaris
Phvul.001G001600 2.0kb upstream 2.0kb upstream 6477 true Chr01: 106827-113303 Phaseolus vulgaris
Phvul.001G001600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 106827-108826 Phaseolus vulgaris
Phvul.001G001600 2.0kb downstream 2.0kb downstream 6477 true Chr01: 108827-115303 Phaseolus vulgaris
Phvul.001G001600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 113304-115303 Phaseolus vulgaris
Phvul.001G001600 5.0kb upstream 5.0kb upstream 9477 true Chr01: 103827-113303 Phaseolus vulgaris
Phvul.001G001600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 103827-108826 Phaseolus vulgaris
Phvul.001G001600 5.0kb downstream 5.0kb downstream 9477 true Chr01: 108827-118303 Phaseolus vulgaris
Phvul.001G001600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 113304-118303 Phaseolus vulgaris
Phvul.001G001600 10.0kb upstream 10.0kb upstream 14477 true Chr01: 98827-113303 Phaseolus vulgaris
Phvul.001G001600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 98827-108826 Phaseolus vulgaris
Phvul.001G001600 10.0kb downstream 10.0kb downstream 14477 true Chr01: 108827-123303 Phaseolus vulgaris
Phvul.001G001600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 113304-123303 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309080 5265 Fabidae View MSA
124067203 5270 Rosid View MSA
123736775 5271 Pentapetalae View MSA
122787797 5272 Eudicot View MSA
122042917 5273 Angiosperm View MSA
121345830 5274 Embryophyte View MSA
123425178 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.46626 0.0 10.3716   Low
cufflinks 6.14699 0.0 17.299    
cufflinks 5.0586 0.0 14.4969    
cufflinks 2.7956 0.0 8.62573   Low
cufflinks 6.67526 0.0 18.7608    
cufflinks 4.05027 0.0 11.8931    
cufflinks 6.74488 0.0 18.7731    
cufflinks 6.69942 0.0 18.5843    
cufflinks 4.69079 0.0 13.5522    
cufflinks 5.60304 0.0 15.9319    
cufflinks 6.83983 0.0 19.1348    

0 Strain