Gene : Phvul.001G095200 P. vulgaris v2.1
Defline:  (1 of 16) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  923
Name:  ? Phvul.001G095200 Secondary Identifier:  ? PAC:37171086
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G095200 0.5kb upstream 0.5kb upstream 3343 true Chr01: 17749154-17752496 Phaseolus vulgaris
Phvul.001G095200 0.5kb upstream 0.5kb upstream 500 false Chr01: 17749154-17749653 Phaseolus vulgaris
Phvul.001G095200 0.5kb downstream 0.5kb downstream 3343 true Chr01: 17749654-17752996 Phaseolus vulgaris
Phvul.001G095200 0.5kb downstream 0.5kb downstream 500 false Chr01: 17752497-17752996 Phaseolus vulgaris
Phvul.001G095200 1.0kb upstream 1.0kb upstream 3843 true Chr01: 17748654-17752496 Phaseolus vulgaris
Phvul.001G095200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 17748654-17749653 Phaseolus vulgaris
Phvul.001G095200 1.0kb downstream 1.0kb downstream 3843 true Chr01: 17749654-17753496 Phaseolus vulgaris
Phvul.001G095200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 17752497-17753496 Phaseolus vulgaris
Phvul.001G095200 2.0kb upstream 2.0kb upstream 4843 true Chr01: 17747654-17752496 Phaseolus vulgaris
Phvul.001G095200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 17747654-17749653 Phaseolus vulgaris
Phvul.001G095200 2.0kb downstream 2.0kb downstream 4843 true Chr01: 17749654-17754496 Phaseolus vulgaris
Phvul.001G095200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 17752497-17754496 Phaseolus vulgaris
Phvul.001G095200 5.0kb upstream 5.0kb upstream 7843 true Chr01: 17744654-17752496 Phaseolus vulgaris
Phvul.001G095200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 17744654-17749653 Phaseolus vulgaris
Phvul.001G095200 5.0kb downstream 5.0kb downstream 7843 true Chr01: 17749654-17757496 Phaseolus vulgaris
Phvul.001G095200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 17752497-17757496 Phaseolus vulgaris
Phvul.001G095200 10.0kb upstream 10.0kb upstream 12843 true Chr01: 17739654-17752496 Phaseolus vulgaris
Phvul.001G095200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 17739654-17749653 Phaseolus vulgaris
Phvul.001G095200 10.0kb downstream 10.0kb downstream 12843 true Chr01: 17749654-17762496 Phaseolus vulgaris
Phvul.001G095200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 17752497-17762496 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309940 5265 Fabidae View MSA
124060677 5270 Rosid View MSA
123746655 5271 Pentapetalae View MSA
122793179 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.745665 0.0 4.80878   Low
cufflinks 1.56772 0.0 5.48767    
cufflinks 1.11089 0.0 4.27157    
cufflinks 1.40547 0.0 6.86119    
cufflinks 2.07394 0.0 6.97917    
cufflinks 1.79398 0.0 7.87933    
cufflinks 1.66516 0.0 7.74048    
cufflinks 2.00522 0.0 6.77507    
cufflinks 1.14379 0.0 4.44712    
cufflinks 3.37674 0.0 12.707   High
cufflinks 1.21606 0.0 6.39958    

0 Strain