Gene : Phvul.001G094000 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  901
Name:  ? Phvul.001G094000 Secondary Identifier:  ? PAC:37170178
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G094000 0.5kb upstream 0.5kb upstream 1898 true Chr01: 16531226-16533123 Phaseolus vulgaris
Phvul.001G094000 0.5kb upstream 0.5kb upstream 500 false Chr01: 16532624-16533123 Phaseolus vulgaris
Phvul.001G094000 0.5kb downstream 0.5kb downstream 1898 true Chr01: 16530726-16532623 Phaseolus vulgaris
Phvul.001G094000 0.5kb downstream 0.5kb downstream 500 false Chr01: 16530726-16531225 Phaseolus vulgaris
Phvul.001G094000 1.0kb upstream 1.0kb upstream 2398 true Chr01: 16531226-16533623 Phaseolus vulgaris
Phvul.001G094000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16532624-16533623 Phaseolus vulgaris
Phvul.001G094000 1.0kb downstream 1.0kb downstream 2398 true Chr01: 16530226-16532623 Phaseolus vulgaris
Phvul.001G094000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16530226-16531225 Phaseolus vulgaris
Phvul.001G094000 2.0kb upstream 2.0kb upstream 3398 true Chr01: 16531226-16534623 Phaseolus vulgaris
Phvul.001G094000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16532624-16534623 Phaseolus vulgaris
Phvul.001G094000 2.0kb downstream 2.0kb downstream 3398 true Chr01: 16529226-16532623 Phaseolus vulgaris
Phvul.001G094000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16529226-16531225 Phaseolus vulgaris
Phvul.001G094000 5.0kb upstream 5.0kb upstream 6398 true Chr01: 16531226-16537623 Phaseolus vulgaris
Phvul.001G094000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16532624-16537623 Phaseolus vulgaris
Phvul.001G094000 5.0kb downstream 5.0kb downstream 6398 true Chr01: 16526226-16532623 Phaseolus vulgaris
Phvul.001G094000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16526226-16531225 Phaseolus vulgaris
Phvul.001G094000 10.0kb upstream 10.0kb upstream 11398 true Chr01: 16531226-16542623 Phaseolus vulgaris
Phvul.001G094000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16532624-16542623 Phaseolus vulgaris
Phvul.001G094000 10.0kb downstream 10.0kb downstream 11398 true Chr01: 16521226-16532623 Phaseolus vulgaris
Phvul.001G094000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16521226-16531225 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027219 5273 Angiosperm View MSA
122296354 5265 Fabidae View MSA
124037694 5270 Rosid View MSA
123745654 5271 Pentapetalae View MSA
122794629 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.807558 0.0 2.87028    
cufflinks 1.13724 0.0 3.92789   High
cufflinks 0.615243 0.0 2.25633    
cufflinks 0.976697 0.0 3.42995    
cufflinks 0.612653 0.0 2.23358 Low  
cufflinks 0.831535 0.0 2.96852    
cufflinks 0.639174 0.0 2.32767    
cufflinks 1.29646 0.0 4.41827   High
cufflinks 0.644708 0.0 2.35663    
cufflinks 0.885871 0.0 3.13727    
cufflinks 0.589429 0.0 2.1618   Low

0 Strain