Gene : Phvul.001G095800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  931
Name:  ? Phvul.001G095800 Secondary Identifier:  ? PAC:37169502
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CHLOROPHYLL-SYN Phaseolus vulgaris pathologic  
Pvulgaris HEME-BIOSYNTHESIS-II Phaseolus vulgaris pathologic  
Pvulgaris PWY-5918 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G095800 0.5kb upstream 0.5kb upstream 23160 true Chr01: 18072152-18095311 Phaseolus vulgaris
Phvul.001G095800 0.5kb upstream 0.5kb upstream 500 false Chr01: 18094812-18095311 Phaseolus vulgaris
Phvul.001G095800 0.5kb downstream 0.5kb downstream 23160 true Chr01: 18071652-18094811 Phaseolus vulgaris
Phvul.001G095800 0.5kb downstream 0.5kb downstream 500 false Chr01: 18071652-18072151 Phaseolus vulgaris
Phvul.001G095800 1.0kb upstream 1.0kb upstream 23660 true Chr01: 18072152-18095811 Phaseolus vulgaris
Phvul.001G095800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 18094812-18095811 Phaseolus vulgaris
Phvul.001G095800 1.0kb downstream 1.0kb downstream 23660 true Chr01: 18071152-18094811 Phaseolus vulgaris
Phvul.001G095800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 18071152-18072151 Phaseolus vulgaris
Phvul.001G095800 2.0kb upstream 2.0kb upstream 24660 true Chr01: 18072152-18096811 Phaseolus vulgaris
Phvul.001G095800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 18094812-18096811 Phaseolus vulgaris
Phvul.001G095800 2.0kb downstream 2.0kb downstream 24660 true Chr01: 18070152-18094811 Phaseolus vulgaris
Phvul.001G095800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 18070152-18072151 Phaseolus vulgaris
Phvul.001G095800 5.0kb upstream 5.0kb upstream 27660 true Chr01: 18072152-18099811 Phaseolus vulgaris
Phvul.001G095800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 18094812-18099811 Phaseolus vulgaris
Phvul.001G095800 5.0kb downstream 5.0kb downstream 27660 true Chr01: 18067152-18094811 Phaseolus vulgaris
Phvul.001G095800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 18067152-18072151 Phaseolus vulgaris
Phvul.001G095800 10.0kb upstream 10.0kb upstream 32660 true Chr01: 18072152-18104811 Phaseolus vulgaris
Phvul.001G095800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 18094812-18104811 Phaseolus vulgaris
Phvul.001G095800 10.0kb downstream 10.0kb downstream 32660 true Chr01: 18062152-18094811 Phaseolus vulgaris
Phvul.001G095800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 18062152-18072151 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302057 5265 Fabidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.07236 0.0 19.4605    
cufflinks 5.35588 0.0 15.1618    
cufflinks 15.0435 0.0 39.2309   High
cufflinks 6.38963 0.0 17.9176    
cufflinks 6.08105 0.0 17.1146    
cufflinks 8.91389 0.0 24.082    
cufflinks 4.25037 0.0 12.3111    
cufflinks 5.20093 0.0 14.691    
cufflinks 3.14327 0.0 9.44752   Low
cufflinks 9.93284 0.0 26.6565   High
cufflinks 6.09149 0.0 17.118    

0 Strain