Gene : Phvul.001G068300 P. vulgaris v2.1
Defline:  (1 of 2) K15171 - transcription elongation factor SPT4 (SUPT4H1, SPT4) Genomic Order:  688
Name:  ? Phvul.001G068300 Secondary Identifier:  ? PAC:37168688
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G068300 0.5kb upstream 0.5kb upstream 4955 true Chr01: 8734528-8739482 Phaseolus vulgaris
Phvul.001G068300 0.5kb upstream 0.5kb upstream 500 false Chr01: 8734528-8735027 Phaseolus vulgaris
Phvul.001G068300 0.5kb downstream 0.5kb downstream 4955 true Chr01: 8735028-8739982 Phaseolus vulgaris
Phvul.001G068300 0.5kb downstream 0.5kb downstream 500 false Chr01: 8739483-8739982 Phaseolus vulgaris
Phvul.001G068300 1.0kb upstream 1.0kb upstream 5455 true Chr01: 8734028-8739482 Phaseolus vulgaris
Phvul.001G068300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 8734028-8735027 Phaseolus vulgaris
Phvul.001G068300 1.0kb downstream 1.0kb downstream 5455 true Chr01: 8735028-8740482 Phaseolus vulgaris
Phvul.001G068300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 8739483-8740482 Phaseolus vulgaris
Phvul.001G068300 2.0kb upstream 2.0kb upstream 6455 true Chr01: 8733028-8739482 Phaseolus vulgaris
Phvul.001G068300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 8733028-8735027 Phaseolus vulgaris
Phvul.001G068300 2.0kb downstream 2.0kb downstream 6455 true Chr01: 8735028-8741482 Phaseolus vulgaris
Phvul.001G068300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 8739483-8741482 Phaseolus vulgaris
Phvul.001G068300 5.0kb upstream 5.0kb upstream 9455 true Chr01: 8730028-8739482 Phaseolus vulgaris
Phvul.001G068300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 8730028-8735027 Phaseolus vulgaris
Phvul.001G068300 5.0kb downstream 5.0kb downstream 9455 true Chr01: 8735028-8744482 Phaseolus vulgaris
Phvul.001G068300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 8739483-8744482 Phaseolus vulgaris
Phvul.001G068300 10.0kb upstream 10.0kb upstream 14455 true Chr01: 8725028-8739482 Phaseolus vulgaris
Phvul.001G068300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 8725028-8735027 Phaseolus vulgaris
Phvul.001G068300 10.0kb downstream 10.0kb downstream 14455 true Chr01: 8735028-8749482 Phaseolus vulgaris
Phvul.001G068300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 8739483-8749482 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302293 5265 Fabidae View MSA
124065394 5270 Rosid View MSA
123740657 5271 Pentapetalae View MSA
122786663 5272 Eudicot View MSA
122042342 5273 Angiosperm View MSA
121345840 5274 Embryophyte View MSA
123426410 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.6951 0.0 71.9392   High
cufflinks 18.4383 0.0 51.334    
cufflinks 14.3028 0.0 40.7531    
cufflinks 21.0424 0.0 57.6229    
cufflinks 16.6839 0.0 46.6438    
cufflinks 9.63457 0.0 28.7535   Low
cufflinks 14.3942 0.0 40.8488    
cufflinks 13.7144 0.0 39.1467    
cufflinks 14.9933 0.0 42.4715    
cufflinks 19.0781 0.0 52.9875    
cufflinks 16.7697 0.0 46.902    

0 Strain