Gene : Phvul.001G048800 P. vulgaris v2.1
Defline:  (1 of 15) PF07714//PF13947 - Protein tyrosine kinase (Pkinase_Tyr) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  492
Name:  ? Phvul.001G048800 Secondary Identifier:  ? PAC:37169344
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G048800 0.5kb upstream 0.5kb upstream 3527 true Chr01: 5168435-5171961 Phaseolus vulgaris
Phvul.001G048800 0.5kb upstream 0.5kb upstream 500 false Chr01: 5171462-5171961 Phaseolus vulgaris
Phvul.001G048800 0.5kb downstream 0.5kb downstream 3527 true Chr01: 5167935-5171461 Phaseolus vulgaris
Phvul.001G048800 0.5kb downstream 0.5kb downstream 500 false Chr01: 5167935-5168434 Phaseolus vulgaris
Phvul.001G048800 1.0kb upstream 1.0kb upstream 4027 true Chr01: 5168435-5172461 Phaseolus vulgaris
Phvul.001G048800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5171462-5172461 Phaseolus vulgaris
Phvul.001G048800 1.0kb downstream 1.0kb downstream 4027 true Chr01: 5167435-5171461 Phaseolus vulgaris
Phvul.001G048800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5167435-5168434 Phaseolus vulgaris
Phvul.001G048800 2.0kb upstream 2.0kb upstream 5027 true Chr01: 5168435-5173461 Phaseolus vulgaris
Phvul.001G048800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5171462-5173461 Phaseolus vulgaris
Phvul.001G048800 2.0kb downstream 2.0kb downstream 5027 true Chr01: 5166435-5171461 Phaseolus vulgaris
Phvul.001G048800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5166435-5168434 Phaseolus vulgaris
Phvul.001G048800 5.0kb upstream 5.0kb upstream 8027 true Chr01: 5168435-5176461 Phaseolus vulgaris
Phvul.001G048800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5171462-5176461 Phaseolus vulgaris
Phvul.001G048800 5.0kb downstream 5.0kb downstream 8027 true Chr01: 5163435-5171461 Phaseolus vulgaris
Phvul.001G048800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5163435-5168434 Phaseolus vulgaris
Phvul.001G048800 10.0kb upstream 10.0kb upstream 13027 true Chr01: 5168435-5181461 Phaseolus vulgaris
Phvul.001G048800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5171462-5181461 Phaseolus vulgaris
Phvul.001G048800 10.0kb downstream 10.0kb downstream 13027 true Chr01: 5158435-5171461 Phaseolus vulgaris
Phvul.001G048800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5158435-5168434 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.310007 0.0 2.76315 Low  
cufflinks 0.599256 0.0 3.72678    
cufflinks 4.54713E-4 0.0 0.0718815 Low Low
cufflinks 0.25023 0.0 1.00436 Low  
cufflinks 0.312115 0.0 1.2238 Low  
cufflinks 0.0990614 0.0 0.422443 Low  
cufflinks 0.664261 0.0 2.98198    
cufflinks 0.234635 0.0 0.931142 Low  
cufflinks 0.305754 0.0 1.20073 Low  
cufflinks 2.0499 0.0 9.42137   High
cufflinks 0.446596 0.0 2.0586 Low  

0 Strain