Gene : Phvul.001G049000 P. vulgaris v2.1
Defline:  (1 of 13) PF00069//PF13947 - Protein kinase domain (Pkinase) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  494
Name:  ? Phvul.001G049000 Secondary Identifier:  ? PAC:37169027
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7409 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G049000 0.5kb upstream 0.5kb upstream 3491 true Chr01: 5251883-5255373 Phaseolus vulgaris
Phvul.001G049000 0.5kb upstream 0.5kb upstream 500 false Chr01: 5254874-5255373 Phaseolus vulgaris
Phvul.001G049000 0.5kb downstream 0.5kb downstream 3491 true Chr01: 5251383-5254873 Phaseolus vulgaris
Phvul.001G049000 0.5kb downstream 0.5kb downstream 500 false Chr01: 5251383-5251882 Phaseolus vulgaris
Phvul.001G049000 1.0kb upstream 1.0kb upstream 3991 true Chr01: 5251883-5255873 Phaseolus vulgaris
Phvul.001G049000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 5254874-5255873 Phaseolus vulgaris
Phvul.001G049000 1.0kb downstream 1.0kb downstream 3991 true Chr01: 5250883-5254873 Phaseolus vulgaris
Phvul.001G049000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 5250883-5251882 Phaseolus vulgaris
Phvul.001G049000 2.0kb upstream 2.0kb upstream 4991 true Chr01: 5251883-5256873 Phaseolus vulgaris
Phvul.001G049000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 5254874-5256873 Phaseolus vulgaris
Phvul.001G049000 2.0kb downstream 2.0kb downstream 4991 true Chr01: 5249883-5254873 Phaseolus vulgaris
Phvul.001G049000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 5249883-5251882 Phaseolus vulgaris
Phvul.001G049000 5.0kb upstream 5.0kb upstream 7991 true Chr01: 5251883-5259873 Phaseolus vulgaris
Phvul.001G049000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 5254874-5259873 Phaseolus vulgaris
Phvul.001G049000 5.0kb downstream 5.0kb downstream 7991 true Chr01: 5246883-5254873 Phaseolus vulgaris
Phvul.001G049000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 5246883-5251882 Phaseolus vulgaris
Phvul.001G049000 10.0kb upstream 10.0kb upstream 12991 true Chr01: 5251883-5264873 Phaseolus vulgaris
Phvul.001G049000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 5254874-5264873 Phaseolus vulgaris
Phvul.001G049000 10.0kb downstream 10.0kb downstream 12991 true Chr01: 5241883-5254873 Phaseolus vulgaris
Phvul.001G049000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 5241883-5251882 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.4843 0.0 4.85673    
cufflinks 0.925567 0.0 3.20747    
cufflinks 6.3359 0.0 17.6916   High
cufflinks 0.537887 0.0 1.98646 Low  
cufflinks 1.21652 0.0 4.12705    
cufflinks 2.06978 0.0 6.54374    
cufflinks 0.771267 0.0 2.72664    
cufflinks 0.372063 0.0 1.39401 Low  
cufflinks 0.0704272 0.0 0.306016 Low Low
cufflinks 1.52029 0.0 4.98933    
cufflinks 1.6005 0.0 5.25321    

0 Strain