Gene : Phvul.001G170600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR23416:SF2 - SERINE ACETYLTRANSFERASE 5 Genomic Order:  1684
Name:  ? Phvul.001G170600 Secondary Identifier:  ? PAC:37168509
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CYSTSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6936 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G170600 0.5kb upstream 0.5kb upstream 2211 true Chr01: 42741304-42743514 Phaseolus vulgaris
Phvul.001G170600 0.5kb upstream 0.5kb upstream 500 false Chr01: 42743015-42743514 Phaseolus vulgaris
Phvul.001G170600 0.5kb downstream 0.5kb downstream 2211 true Chr01: 42740804-42743014 Phaseolus vulgaris
Phvul.001G170600 0.5kb downstream 0.5kb downstream 500 false Chr01: 42740804-42741303 Phaseolus vulgaris
Phvul.001G170600 1.0kb upstream 1.0kb upstream 2711 true Chr01: 42741304-42744014 Phaseolus vulgaris
Phvul.001G170600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42743015-42744014 Phaseolus vulgaris
Phvul.001G170600 1.0kb downstream 1.0kb downstream 2711 true Chr01: 42740304-42743014 Phaseolus vulgaris
Phvul.001G170600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42740304-42741303 Phaseolus vulgaris
Phvul.001G170600 2.0kb upstream 2.0kb upstream 3711 true Chr01: 42741304-42745014 Phaseolus vulgaris
Phvul.001G170600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42743015-42745014 Phaseolus vulgaris
Phvul.001G170600 2.0kb downstream 2.0kb downstream 3711 true Chr01: 42739304-42743014 Phaseolus vulgaris
Phvul.001G170600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42739304-42741303 Phaseolus vulgaris
Phvul.001G170600 5.0kb upstream 5.0kb upstream 6711 true Chr01: 42741304-42748014 Phaseolus vulgaris
Phvul.001G170600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42743015-42748014 Phaseolus vulgaris
Phvul.001G170600 5.0kb downstream 5.0kb downstream 6711 true Chr01: 42736304-42743014 Phaseolus vulgaris
Phvul.001G170600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42736304-42741303 Phaseolus vulgaris
Phvul.001G170600 10.0kb upstream 10.0kb upstream 11711 true Chr01: 42741304-42753014 Phaseolus vulgaris
Phvul.001G170600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42743015-42753014 Phaseolus vulgaris
Phvul.001G170600 10.0kb downstream 10.0kb downstream 11711 true Chr01: 42731304-42743014 Phaseolus vulgaris
Phvul.001G170600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42731304-42741303 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309116 5265 Fabidae View MSA
124068098 5270 Rosid View MSA
123738273 5271 Pentapetalae View MSA
122789751 5272 Eudicot View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.8049 0.0 97.8646 High  
cufflinks 34.6986 0.0 89.7143 High  
cufflinks 52.3613 0.0 136.219 High High
cufflinks 48.5001 0.0 126.794 High  
cufflinks 40.7631 0.0 105.799 High  
cufflinks 20.5929 0.0 53.7689   Low
cufflinks 25.522 0.0 66.0402   Low
cufflinks 39.5357 0.0 102.326 High  
cufflinks 26.3062 0.0 68.0567    
cufflinks 66.843 0.0 177.599 High High
cufflinks 32.2535 0.0 83.3927    

0 Strain