Gene : Phvul.001G170900 P. vulgaris v2.1
Defline:  (1 of 1) K01778 - diaminopimelate epimerase (dapF) Genomic Order:  1687
Name:  ? Phvul.001G170900 Secondary Identifier:  ? PAC:37170702
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5097 Phaseolus vulgaris pathologic  
Pvulgaris PWY-724 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G170900 0.5kb upstream 0.5kb upstream 7774 true Chr01: 42762706-42770479 Phaseolus vulgaris
Phvul.001G170900 0.5kb upstream 0.5kb upstream 500 false Chr01: 42769980-42770479 Phaseolus vulgaris
Phvul.001G170900 0.5kb downstream 0.5kb downstream 7774 true Chr01: 42762206-42769979 Phaseolus vulgaris
Phvul.001G170900 0.5kb downstream 0.5kb downstream 500 false Chr01: 42762206-42762705 Phaseolus vulgaris
Phvul.001G170900 1.0kb upstream 1.0kb upstream 8274 true Chr01: 42762706-42770979 Phaseolus vulgaris
Phvul.001G170900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 42769980-42770979 Phaseolus vulgaris
Phvul.001G170900 1.0kb downstream 1.0kb downstream 8274 true Chr01: 42761706-42769979 Phaseolus vulgaris
Phvul.001G170900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 42761706-42762705 Phaseolus vulgaris
Phvul.001G170900 2.0kb upstream 2.0kb upstream 9274 true Chr01: 42762706-42771979 Phaseolus vulgaris
Phvul.001G170900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 42769980-42771979 Phaseolus vulgaris
Phvul.001G170900 2.0kb downstream 2.0kb downstream 9274 true Chr01: 42760706-42769979 Phaseolus vulgaris
Phvul.001G170900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 42760706-42762705 Phaseolus vulgaris
Phvul.001G170900 5.0kb upstream 5.0kb upstream 12274 true Chr01: 42762706-42774979 Phaseolus vulgaris
Phvul.001G170900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 42769980-42774979 Phaseolus vulgaris
Phvul.001G170900 5.0kb downstream 5.0kb downstream 12274 true Chr01: 42757706-42769979 Phaseolus vulgaris
Phvul.001G170900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 42757706-42762705 Phaseolus vulgaris
Phvul.001G170900 10.0kb upstream 10.0kb upstream 17274 true Chr01: 42762706-42779979 Phaseolus vulgaris
Phvul.001G170900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 42769980-42779979 Phaseolus vulgaris
Phvul.001G170900 10.0kb downstream 10.0kb downstream 17274 true Chr01: 42752706-42769979 Phaseolus vulgaris
Phvul.001G170900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 42752706-42762705 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306016 5265 Fabidae View MSA
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.2898 0.0 137.709 High Low
cufflinks 86.1121 0.0 236.053 High  
cufflinks 81.7164 0.0 223.248 High  
cufflinks 106.426 0.0 297.57 High High
cufflinks 108.442 0.0 304.793 High High
cufflinks 73.8178 0.0 199.717 High  
cufflinks 66.7118 0.0 179.506 High  
cufflinks 65.7501 0.0 176.588 High  
cufflinks 90.047 0.0 248.585 High  
cufflinks 75.8918 0.0 205.592 High  
cufflinks 96.8854 0.0 268.924 High  

0 Strain