Gene : Phvul.001G162000 P. vulgaris v2.1
Defline:  (1 of 2) K12667 - oligosaccharyltransferase complex subunit delta (ribophorin II) (SWP1, RPN2) Genomic Order:  1596
Name:  ? Phvul.001G162000 Secondary Identifier:  ? PAC:37167958
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G162000 0.5kb upstream 0.5kb upstream 9607 true Chr01: 41656979-41666585 Phaseolus vulgaris
Phvul.001G162000 0.5kb upstream 0.5kb upstream 500 false Chr01: 41666086-41666585 Phaseolus vulgaris
Phvul.001G162000 0.5kb downstream 0.5kb downstream 9607 true Chr01: 41656479-41666085 Phaseolus vulgaris
Phvul.001G162000 0.5kb downstream 0.5kb downstream 500 false Chr01: 41656479-41656978 Phaseolus vulgaris
Phvul.001G162000 1.0kb upstream 1.0kb upstream 10107 true Chr01: 41656979-41667085 Phaseolus vulgaris
Phvul.001G162000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 41666086-41667085 Phaseolus vulgaris
Phvul.001G162000 1.0kb downstream 1.0kb downstream 10107 true Chr01: 41655979-41666085 Phaseolus vulgaris
Phvul.001G162000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 41655979-41656978 Phaseolus vulgaris
Phvul.001G162000 2.0kb upstream 2.0kb upstream 11107 true Chr01: 41656979-41668085 Phaseolus vulgaris
Phvul.001G162000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 41666086-41668085 Phaseolus vulgaris
Phvul.001G162000 2.0kb downstream 2.0kb downstream 11107 true Chr01: 41654979-41666085 Phaseolus vulgaris
Phvul.001G162000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 41654979-41656978 Phaseolus vulgaris
Phvul.001G162000 5.0kb upstream 5.0kb upstream 14107 true Chr01: 41656979-41671085 Phaseolus vulgaris
Phvul.001G162000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 41666086-41671085 Phaseolus vulgaris
Phvul.001G162000 5.0kb downstream 5.0kb downstream 14107 true Chr01: 41651979-41666085 Phaseolus vulgaris
Phvul.001G162000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 41651979-41656978 Phaseolus vulgaris
Phvul.001G162000 10.0kb upstream 10.0kb upstream 19107 true Chr01: 41656979-41676085 Phaseolus vulgaris
Phvul.001G162000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 41666086-41676085 Phaseolus vulgaris
Phvul.001G162000 10.0kb downstream 10.0kb downstream 19107 true Chr01: 41646979-41666085 Phaseolus vulgaris
Phvul.001G162000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 41646979-41656978 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041028 5273 Angiosperm View MSA
122310826 5265 Fabidae View MSA
124066748 5270 Rosid View MSA
123737285 5271 Pentapetalae View MSA
122787550 5272 Eudicot View MSA
121344151 5274 Embryophyte View MSA
123379986 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.129 0.0 57.208   Low
cufflinks 41.2159 0.0 108.673 High High
cufflinks 23.5793 0.0 60.9884   Low
cufflinks 35.4923 0.0 92.5887 High  
cufflinks 30.9289 0.0 80.3472    
cufflinks 31.9669 0.0 83.2286    
cufflinks 33.7353 0.0 87.9279 High  
cufflinks 34.2923 0.0 89.6064 High  
cufflinks 45.7199 0.0 120.85 High High
cufflinks 36.794 0.0 96.401 High  
cufflinks 30.9439 0.0 80.3702    

0 Strain