Gene : Phvul.001G150500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10906:SF2 - PREPROTEIN TRANSLOCASE SUBUNIT SCY2, CHLOROPLASTIC Genomic Order:  1480
Name:  ? Phvul.001G150500 Secondary Identifier:  ? PAC:37170369
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G150500 0.5kb upstream 0.5kb upstream 8046 true Chr01: 39807375-39815420 Phaseolus vulgaris
Phvul.001G150500 0.5kb upstream 0.5kb upstream 500 false Chr01: 39814921-39815420 Phaseolus vulgaris
Phvul.001G150500 0.5kb downstream 0.5kb downstream 8046 true Chr01: 39806875-39814920 Phaseolus vulgaris
Phvul.001G150500 0.5kb downstream 0.5kb downstream 500 false Chr01: 39806875-39807374 Phaseolus vulgaris
Phvul.001G150500 1.0kb upstream 1.0kb upstream 8546 true Chr01: 39807375-39815920 Phaseolus vulgaris
Phvul.001G150500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 39814921-39815920 Phaseolus vulgaris
Phvul.001G150500 1.0kb downstream 1.0kb downstream 8546 true Chr01: 39806375-39814920 Phaseolus vulgaris
Phvul.001G150500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 39806375-39807374 Phaseolus vulgaris
Phvul.001G150500 2.0kb upstream 2.0kb upstream 9546 true Chr01: 39807375-39816920 Phaseolus vulgaris
Phvul.001G150500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 39814921-39816920 Phaseolus vulgaris
Phvul.001G150500 2.0kb downstream 2.0kb downstream 9546 true Chr01: 39805375-39814920 Phaseolus vulgaris
Phvul.001G150500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 39805375-39807374 Phaseolus vulgaris
Phvul.001G150500 5.0kb upstream 5.0kb upstream 12546 true Chr01: 39807375-39819920 Phaseolus vulgaris
Phvul.001G150500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 39814921-39819920 Phaseolus vulgaris
Phvul.001G150500 5.0kb downstream 5.0kb downstream 12546 true Chr01: 39802375-39814920 Phaseolus vulgaris
Phvul.001G150500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 39802375-39807374 Phaseolus vulgaris
Phvul.001G150500 10.0kb upstream 10.0kb upstream 17546 true Chr01: 39807375-39824920 Phaseolus vulgaris
Phvul.001G150500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 39814921-39824920 Phaseolus vulgaris
Phvul.001G150500 10.0kb downstream 10.0kb downstream 17546 true Chr01: 39797375-39814920 Phaseolus vulgaris
Phvul.001G150500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 39797375-39807374 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301326 5265 Fabidae View MSA
124061743 5270 Rosid View MSA
123737795 5271 Pentapetalae View MSA
122790325 5272 Eudicot View MSA
122042778 5273 Angiosperm View MSA
121345832 5274 Embryophyte View MSA
123425781 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.3306 0.0 13.5323   Low
cufflinks 6.18127 0.0 19.8918   High
cufflinks 4.67956 0.0 15.28    
cufflinks 3.2193 0.0 11.6178   Low
cufflinks 5.83432 0.0 21.32    
cufflinks 4.49619 0.0 14.8039    
cufflinks 3.82297 0.0 13.0809    
cufflinks 5.15998 0.0 16.4313    
cufflinks 3.41883 0.0 12.1337   Low
cufflinks 7.62664 0.0 26.2041   High
cufflinks 4.31477 0.0 14.4676    

0 Strain