Gene : Phvul.001G139900 P. vulgaris v2.1
Defline:  (1 of 3) K02969 - small subunit ribosomal protein S20e (RP-S20e, RPS20) Genomic Order:  1375
Name:  ? Phvul.001G139900 Secondary Identifier:  ? PAC:37170506
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G139900 0.5kb upstream 0.5kb upstream 2282 true Chr01: 38147511-38149792 Phaseolus vulgaris
Phvul.001G139900 0.5kb upstream 0.5kb upstream 500 false Chr01: 38147511-38148010 Phaseolus vulgaris
Phvul.001G139900 0.5kb downstream 0.5kb downstream 2282 true Chr01: 38148011-38150292 Phaseolus vulgaris
Phvul.001G139900 0.5kb downstream 0.5kb downstream 500 false Chr01: 38149793-38150292 Phaseolus vulgaris
Phvul.001G139900 1.0kb upstream 1.0kb upstream 2782 true Chr01: 38147011-38149792 Phaseolus vulgaris
Phvul.001G139900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38147011-38148010 Phaseolus vulgaris
Phvul.001G139900 1.0kb downstream 1.0kb downstream 2782 true Chr01: 38148011-38150792 Phaseolus vulgaris
Phvul.001G139900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38149793-38150792 Phaseolus vulgaris
Phvul.001G139900 2.0kb upstream 2.0kb upstream 3782 true Chr01: 38146011-38149792 Phaseolus vulgaris
Phvul.001G139900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38146011-38148010 Phaseolus vulgaris
Phvul.001G139900 2.0kb downstream 2.0kb downstream 3782 true Chr01: 38148011-38151792 Phaseolus vulgaris
Phvul.001G139900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38149793-38151792 Phaseolus vulgaris
Phvul.001G139900 5.0kb upstream 5.0kb upstream 6782 true Chr01: 38143011-38149792 Phaseolus vulgaris
Phvul.001G139900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38143011-38148010 Phaseolus vulgaris
Phvul.001G139900 5.0kb downstream 5.0kb downstream 6782 true Chr01: 38148011-38154792 Phaseolus vulgaris
Phvul.001G139900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38149793-38154792 Phaseolus vulgaris
Phvul.001G139900 10.0kb upstream 10.0kb upstream 11782 true Chr01: 38138011-38149792 Phaseolus vulgaris
Phvul.001G139900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38138011-38148010 Phaseolus vulgaris
Phvul.001G139900 10.0kb downstream 10.0kb downstream 11782 true Chr01: 38148011-38159792 Phaseolus vulgaris
Phvul.001G139900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38149793-38159792 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309868 5265 Fabidae View MSA
124068920 5270 Rosid View MSA
123743222 5271 Pentapetalae View MSA
122791885 5272 Eudicot View MSA
122044190 5273 Angiosperm View MSA
121349858 5274 Embryophyte View MSA
123426171 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 116.598 0.0 302.597 High  
cufflinks 139.678 0.0 365.681 High  
cufflinks 73.8343 0.0 190.948 High Low
cufflinks 181.669 0.0 483.413 High High
cufflinks 116.074 0.0 301.292 High  
cufflinks 76.871 0.0 198.741 High Low
cufflinks 103.668 0.0 268.597 High  
cufflinks 129.098 0.0 336.3 High  
cufflinks 143.579 0.0 376.85 High  
cufflinks 63.2198 0.0 164.002 High Low
cufflinks 113.428 0.0 294.414 High  

0 Strain