Gene : Phvul.001G143700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10438:SF283 - THIOREDOXIN-LIKE 3-1, CHLOROPLASTIC Genomic Order:  1414
Name:  ? Phvul.001G143700 Secondary Identifier:  ? PAC:37169538
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris THIOREDOX-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G143700 0.5kb upstream 0.5kb upstream 2261 true Chr01: 38741064-38743324 Phaseolus vulgaris
Phvul.001G143700 0.5kb upstream 0.5kb upstream 500 false Chr01: 38741064-38741563 Phaseolus vulgaris
Phvul.001G143700 0.5kb downstream 0.5kb downstream 2261 true Chr01: 38741564-38743824 Phaseolus vulgaris
Phvul.001G143700 0.5kb downstream 0.5kb downstream 500 false Chr01: 38743325-38743824 Phaseolus vulgaris
Phvul.001G143700 1.0kb upstream 1.0kb upstream 2761 true Chr01: 38740564-38743324 Phaseolus vulgaris
Phvul.001G143700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 38740564-38741563 Phaseolus vulgaris
Phvul.001G143700 1.0kb downstream 1.0kb downstream 2761 true Chr01: 38741564-38744324 Phaseolus vulgaris
Phvul.001G143700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 38743325-38744324 Phaseolus vulgaris
Phvul.001G143700 2.0kb upstream 2.0kb upstream 3761 true Chr01: 38739564-38743324 Phaseolus vulgaris
Phvul.001G143700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 38739564-38741563 Phaseolus vulgaris
Phvul.001G143700 2.0kb downstream 2.0kb downstream 3761 true Chr01: 38741564-38745324 Phaseolus vulgaris
Phvul.001G143700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 38743325-38745324 Phaseolus vulgaris
Phvul.001G143700 5.0kb upstream 5.0kb upstream 6761 true Chr01: 38736564-38743324 Phaseolus vulgaris
Phvul.001G143700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 38736564-38741563 Phaseolus vulgaris
Phvul.001G143700 5.0kb downstream 5.0kb downstream 6761 true Chr01: 38741564-38748324 Phaseolus vulgaris
Phvul.001G143700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 38743325-38748324 Phaseolus vulgaris
Phvul.001G143700 10.0kb upstream 10.0kb upstream 11761 true Chr01: 38731564-38743324 Phaseolus vulgaris
Phvul.001G143700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 38731564-38741563 Phaseolus vulgaris
Phvul.001G143700 10.0kb downstream 10.0kb downstream 11761 true Chr01: 38741564-38753324 Phaseolus vulgaris
Phvul.001G143700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 38743325-38753324 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300113 5265 Fabidae View MSA
124066341 5270 Rosid View MSA
123752896 5271 Pentapetalae View MSA
122787766 5272 Eudicot View MSA
122051543 5273 Angiosperm View MSA
121347731 5274 Embryophyte View MSA
123380608 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.375 0.0 76.4498    
cufflinks 11.9071 0.0 33.0678    
cufflinks 122.941 0.0 334.717 High High
cufflinks 7.0433 0.0 20.8188    
cufflinks 9.75035 0.0 27.7901    
cufflinks 27.5919 0.0 71.9617    
cufflinks 1.51737 0.0 5.26729   Low
cufflinks 1.03002 0.0 3.70176   Low
cufflinks 2.18582 0.0 7.29404    
cufflinks 19.243 0.0 51.4446    
cufflinks 6.09562 0.0 18.2236    

0 Strain