Gene : Phvul.001G137900 P. vulgaris v2.1
Defline:  (1 of 4) K14820 - ribosome biogenesis protein BRX1 (BRX1, BRIX1) Genomic Order:  1353
Name:  ? Phvul.001G137900 Secondary Identifier:  ? PAC:37171170
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G137900 0.5kb upstream 0.5kb upstream 4536 true Chr01: 37873063-37877598 Phaseolus vulgaris
Phvul.001G137900 0.5kb upstream 0.5kb upstream 500 false Chr01: 37877099-37877598 Phaseolus vulgaris
Phvul.001G137900 0.5kb downstream 0.5kb downstream 4536 true Chr01: 37872563-37877098 Phaseolus vulgaris
Phvul.001G137900 0.5kb downstream 0.5kb downstream 500 false Chr01: 37872563-37873062 Phaseolus vulgaris
Phvul.001G137900 1.0kb upstream 1.0kb upstream 5036 true Chr01: 37873063-37878098 Phaseolus vulgaris
Phvul.001G137900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 37877099-37878098 Phaseolus vulgaris
Phvul.001G137900 1.0kb downstream 1.0kb downstream 5036 true Chr01: 37872063-37877098 Phaseolus vulgaris
Phvul.001G137900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 37872063-37873062 Phaseolus vulgaris
Phvul.001G137900 2.0kb upstream 2.0kb upstream 6036 true Chr01: 37873063-37879098 Phaseolus vulgaris
Phvul.001G137900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 37877099-37879098 Phaseolus vulgaris
Phvul.001G137900 2.0kb downstream 2.0kb downstream 6036 true Chr01: 37871063-37877098 Phaseolus vulgaris
Phvul.001G137900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 37871063-37873062 Phaseolus vulgaris
Phvul.001G137900 5.0kb upstream 5.0kb upstream 9036 true Chr01: 37873063-37882098 Phaseolus vulgaris
Phvul.001G137900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 37877099-37882098 Phaseolus vulgaris
Phvul.001G137900 5.0kb downstream 5.0kb downstream 9036 true Chr01: 37868063-37877098 Phaseolus vulgaris
Phvul.001G137900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 37868063-37873062 Phaseolus vulgaris
Phvul.001G137900 10.0kb upstream 10.0kb upstream 14036 true Chr01: 37873063-37887098 Phaseolus vulgaris
Phvul.001G137900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 37877099-37887098 Phaseolus vulgaris
Phvul.001G137900 10.0kb downstream 10.0kb downstream 14036 true Chr01: 37863063-37877098 Phaseolus vulgaris
Phvul.001G137900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 37863063-37873062 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301161 5265 Fabidae View MSA
124066566 5270 Rosid View MSA
123743226 5271 Pentapetalae View MSA
122791953 5272 Eudicot View MSA
122044943 5273 Angiosperm View MSA
121349152 5274 Embryophyte View MSA
123424371 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.18 0.0 36.475    
cufflinks 11.8485 0.0 41.5238   High
cufflinks 5.03443 0.0 17.9541   Low
cufflinks 8.11311 0.0 31.0009    
cufflinks 8.7268 0.0 32.7951    
cufflinks 5.05364 0.0 18.1869   Low
cufflinks 9.98723 0.0 35.936    
cufflinks 12.0673 0.0 41.5863   High
cufflinks 12.6559 0.0 43.7848   High
cufflinks 6.14388 0.0 21.2803    
cufflinks 7.78746 0.0 29.8631    

0 Strain