Gene : Phvul.001G122900 P. vulgaris v2.1
Defline:  (1 of 12) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1198
Name:  ? Phvul.001G122900 Secondary Identifier:  ? PAC:37168920
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G122900 0.5kb upstream 0.5kb upstream 7397 true Chr01: 33909501-33916897 Phaseolus vulgaris
Phvul.001G122900 0.5kb upstream 0.5kb upstream 500 false Chr01: 33909501-33910000 Phaseolus vulgaris
Phvul.001G122900 0.5kb downstream 0.5kb downstream 7397 true Chr01: 33910001-33917397 Phaseolus vulgaris
Phvul.001G122900 0.5kb downstream 0.5kb downstream 500 false Chr01: 33916898-33917397 Phaseolus vulgaris
Phvul.001G122900 1.0kb upstream 1.0kb upstream 7897 true Chr01: 33909001-33916897 Phaseolus vulgaris
Phvul.001G122900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 33909001-33910000 Phaseolus vulgaris
Phvul.001G122900 1.0kb downstream 1.0kb downstream 7897 true Chr01: 33910001-33917897 Phaseolus vulgaris
Phvul.001G122900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 33916898-33917897 Phaseolus vulgaris
Phvul.001G122900 2.0kb upstream 2.0kb upstream 8897 true Chr01: 33908001-33916897 Phaseolus vulgaris
Phvul.001G122900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 33908001-33910000 Phaseolus vulgaris
Phvul.001G122900 2.0kb downstream 2.0kb downstream 8897 true Chr01: 33910001-33918897 Phaseolus vulgaris
Phvul.001G122900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 33916898-33918897 Phaseolus vulgaris
Phvul.001G122900 5.0kb upstream 5.0kb upstream 11897 true Chr01: 33905001-33916897 Phaseolus vulgaris
Phvul.001G122900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 33905001-33910000 Phaseolus vulgaris
Phvul.001G122900 5.0kb downstream 5.0kb downstream 11897 true Chr01: 33910001-33921897 Phaseolus vulgaris
Phvul.001G122900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 33916898-33921897 Phaseolus vulgaris
Phvul.001G122900 10.0kb upstream 10.0kb upstream 16897 true Chr01: 33900001-33916897 Phaseolus vulgaris
Phvul.001G122900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 33900001-33910000 Phaseolus vulgaris
Phvul.001G122900 10.0kb downstream 10.0kb downstream 16897 true Chr01: 33910001-33926897 Phaseolus vulgaris
Phvul.001G122900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 33916898-33926897 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311646 5265 Fabidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.09404 0.0 8.40915   Low
cufflinks 5.59447 0.0 20.4976   High
cufflinks 1.73176 0.0 5.68444   Low
cufflinks 3.61915 0.0 12.6217    
cufflinks 3.017 0.0 10.9463    
cufflinks 2.0225 0.0 8.08149   Low
cufflinks 3.73233 0.0 14.8032    
cufflinks 4.55064 0.0 17.4348   High
cufflinks 3.80263 0.0 12.8458    
cufflinks 3.5514 0.0 14.3634    
cufflinks 2.71014 0.0 10.4026    

0 Strain