Gene : Phvul.001G234600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31100:SF13 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 15 Genomic Order:  2326
Name:  ? Phvul.001G234600 Secondary Identifier:  ? PAC:37167796
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G234600 0.5kb upstream 0.5kb upstream 2059 true Chr01: 48832897-48834955 Phaseolus vulgaris
Phvul.001G234600 0.5kb upstream 0.5kb upstream 500 false Chr01: 48834456-48834955 Phaseolus vulgaris
Phvul.001G234600 0.5kb downstream 0.5kb downstream 2059 true Chr01: 48832397-48834455 Phaseolus vulgaris
Phvul.001G234600 0.5kb downstream 0.5kb downstream 500 false Chr01: 48832397-48832896 Phaseolus vulgaris
Phvul.001G234600 1.0kb upstream 1.0kb upstream 2559 true Chr01: 48832897-48835455 Phaseolus vulgaris
Phvul.001G234600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48834456-48835455 Phaseolus vulgaris
Phvul.001G234600 1.0kb downstream 1.0kb downstream 2559 true Chr01: 48831897-48834455 Phaseolus vulgaris
Phvul.001G234600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48831897-48832896 Phaseolus vulgaris
Phvul.001G234600 2.0kb upstream 2.0kb upstream 3559 true Chr01: 48832897-48836455 Phaseolus vulgaris
Phvul.001G234600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48834456-48836455 Phaseolus vulgaris
Phvul.001G234600 2.0kb downstream 2.0kb downstream 3559 true Chr01: 48830897-48834455 Phaseolus vulgaris
Phvul.001G234600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48830897-48832896 Phaseolus vulgaris
Phvul.001G234600 5.0kb upstream 5.0kb upstream 6559 true Chr01: 48832897-48839455 Phaseolus vulgaris
Phvul.001G234600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48834456-48839455 Phaseolus vulgaris
Phvul.001G234600 5.0kb downstream 5.0kb downstream 6559 true Chr01: 48827897-48834455 Phaseolus vulgaris
Phvul.001G234600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48827897-48832896 Phaseolus vulgaris
Phvul.001G234600 10.0kb upstream 10.0kb upstream 11559 true Chr01: 48832897-48844455 Phaseolus vulgaris
Phvul.001G234600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48834456-48844455 Phaseolus vulgaris
Phvul.001G234600 10.0kb downstream 10.0kb downstream 11559 true Chr01: 48822897-48834455 Phaseolus vulgaris
Phvul.001G234600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48822897-48832896 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303036 5265 Fabidae View MSA
124060975 5270 Rosid View MSA
123751689 5271 Pentapetalae View MSA
122796160 5272 Eudicot View MSA
122048201 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.60743 0.0 5.25708   Low
cufflinks 3.83045 0.0 11.3759    
cufflinks 5.05048 0.0 14.631    
cufflinks 1.5996 0.0 5.18557   Low
cufflinks 11.6289 0.0 30.9245   High
cufflinks 4.54205 0.0 13.2505    
cufflinks 2.86227 0.0 8.65854    
cufflinks 1.59809 0.0 5.22874   Low
cufflinks 7.50046 0.0 20.575    
cufflinks 5.57798 0.0 15.8863    
cufflinks 5.90096 0.0 16.6057    

0 Strain