Gene : Phvul.001G227000 P. vulgaris v2.1
Defline:  (1 of 3) PTHR22847:SF424 - TOPLESS-RELATED PROTEIN 2-RELATED Genomic Order:  2252
Name:  ? Phvul.001G227000 Secondary Identifier:  ? PAC:37170567
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G227000 0.5kb upstream 0.5kb upstream 9897 true Chr01: 48140984-48150880 Phaseolus vulgaris
Phvul.001G227000 0.5kb upstream 0.5kb upstream 500 false Chr01: 48150381-48150880 Phaseolus vulgaris
Phvul.001G227000 0.5kb downstream 0.5kb downstream 9897 true Chr01: 48140484-48150380 Phaseolus vulgaris
Phvul.001G227000 0.5kb downstream 0.5kb downstream 500 false Chr01: 48140484-48140983 Phaseolus vulgaris
Phvul.001G227000 1.0kb upstream 1.0kb upstream 10397 true Chr01: 48140984-48151380 Phaseolus vulgaris
Phvul.001G227000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 48150381-48151380 Phaseolus vulgaris
Phvul.001G227000 1.0kb downstream 1.0kb downstream 10397 true Chr01: 48139984-48150380 Phaseolus vulgaris
Phvul.001G227000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 48139984-48140983 Phaseolus vulgaris
Phvul.001G227000 2.0kb upstream 2.0kb upstream 11397 true Chr01: 48140984-48152380 Phaseolus vulgaris
Phvul.001G227000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 48150381-48152380 Phaseolus vulgaris
Phvul.001G227000 2.0kb downstream 2.0kb downstream 11397 true Chr01: 48138984-48150380 Phaseolus vulgaris
Phvul.001G227000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 48138984-48140983 Phaseolus vulgaris
Phvul.001G227000 5.0kb upstream 5.0kb upstream 14397 true Chr01: 48140984-48155380 Phaseolus vulgaris
Phvul.001G227000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 48150381-48155380 Phaseolus vulgaris
Phvul.001G227000 5.0kb downstream 5.0kb downstream 14397 true Chr01: 48135984-48150380 Phaseolus vulgaris
Phvul.001G227000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 48135984-48140983 Phaseolus vulgaris
Phvul.001G227000 10.0kb upstream 10.0kb upstream 19397 true Chr01: 48140984-48160380 Phaseolus vulgaris
Phvul.001G227000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 48150381-48160380 Phaseolus vulgaris
Phvul.001G227000 10.0kb downstream 10.0kb downstream 19397 true Chr01: 48130984-48150380 Phaseolus vulgaris
Phvul.001G227000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 48130984-48140983 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026551 5273 Angiosperm View MSA
122313709 5265 Fabidae View MSA
124065590 5270 Rosid View MSA
123741306 5271 Pentapetalae View MSA
122793057 5272 Eudicot View MSA
121296383 5274 Embryophyte View MSA
123334555 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.83129 0.0 28.32    
cufflinks 13.2336 0.0 52.8233    
cufflinks 5.38536 0.0 20.3645   Low
cufflinks 4.16378 0.0 19.1698   Low
cufflinks 6.5488 0.0 24.539    
cufflinks 6.93399 0.0 26.1671    
cufflinks 18.3553 0.0 67.163   High
cufflinks 16.2707 0.0 58.7906    
cufflinks 13.4233 0.0 49.3419    
cufflinks 20.8397 0.0 77.796   High
cufflinks 6.86482 0.0 26.0224    

0 Strain