Gene : Phvul.001G218300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11451:SF21 - BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE Genomic Order:  2166
Name:  ? Phvul.001G218300 Secondary Identifier:  ? PAC:37168512
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G218300 0.5kb upstream 0.5kb upstream 5354 true Chr01: 47384279-47389632 Phaseolus vulgaris
Phvul.001G218300 0.5kb upstream 0.5kb upstream 500 false Chr01: 47384279-47384778 Phaseolus vulgaris
Phvul.001G218300 0.5kb downstream 0.5kb downstream 5354 true Chr01: 47384779-47390132 Phaseolus vulgaris
Phvul.001G218300 0.5kb downstream 0.5kb downstream 500 false Chr01: 47389633-47390132 Phaseolus vulgaris
Phvul.001G218300 1.0kb upstream 1.0kb upstream 5854 true Chr01: 47383779-47389632 Phaseolus vulgaris
Phvul.001G218300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 47383779-47384778 Phaseolus vulgaris
Phvul.001G218300 1.0kb downstream 1.0kb downstream 5854 true Chr01: 47384779-47390632 Phaseolus vulgaris
Phvul.001G218300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 47389633-47390632 Phaseolus vulgaris
Phvul.001G218300 2.0kb upstream 2.0kb upstream 6854 true Chr01: 47382779-47389632 Phaseolus vulgaris
Phvul.001G218300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 47382779-47384778 Phaseolus vulgaris
Phvul.001G218300 2.0kb downstream 2.0kb downstream 6854 true Chr01: 47384779-47391632 Phaseolus vulgaris
Phvul.001G218300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 47389633-47391632 Phaseolus vulgaris
Phvul.001G218300 5.0kb upstream 5.0kb upstream 9854 true Chr01: 47379779-47389632 Phaseolus vulgaris
Phvul.001G218300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 47379779-47384778 Phaseolus vulgaris
Phvul.001G218300 5.0kb downstream 5.0kb downstream 9854 true Chr01: 47384779-47394632 Phaseolus vulgaris
Phvul.001G218300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 47389633-47394632 Phaseolus vulgaris
Phvul.001G218300 10.0kb upstream 10.0kb upstream 14854 true Chr01: 47374779-47389632 Phaseolus vulgaris
Phvul.001G218300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 47374779-47384778 Phaseolus vulgaris
Phvul.001G218300 10.0kb downstream 10.0kb downstream 14854 true Chr01: 47384779-47399632 Phaseolus vulgaris
Phvul.001G218300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 47389633-47399632 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308357 5265 Fabidae View MSA
124064223 5270 Rosid View MSA
123739091 5271 Pentapetalae View MSA
122787738 5272 Eudicot View MSA
122046547 5273 Angiosperm View MSA
121346675 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.2184 0.0 115.653 High Low
cufflinks 64.7194 0.0 179.459 High  
cufflinks 58.7439 0.0 161.695 High  
cufflinks 61.4869 0.0 167.998 High  
cufflinks 55.0964 0.0 149.342 High  
cufflinks 53.7237 0.0 146.343 High  
cufflinks 71.323 0.0 199.733 High  
cufflinks 72.4962 0.0 204.476 High  
cufflinks 105.941 0.0 310.179 High High
cufflinks 50.1565 0.0 135.649 High  
cufflinks 63.3807 0.0 174.546 High  

0 Strain