Gene : Phvul.001G213800 P. vulgaris v2.1
Defline:  (1 of 1) PF04795 - PAPA-1-like conserved region (PAPA-1) Genomic Order:  2120
Name:  ? Phvul.001G213800 Secondary Identifier:  ? PAC:37169763
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G213800 0.5kb upstream 0.5kb upstream 4669 true Chr01: 46989302-46993970 Phaseolus vulgaris
Phvul.001G213800 0.5kb upstream 0.5kb upstream 500 false Chr01: 46993471-46993970 Phaseolus vulgaris
Phvul.001G213800 0.5kb downstream 0.5kb downstream 4669 true Chr01: 46988802-46993470 Phaseolus vulgaris
Phvul.001G213800 0.5kb downstream 0.5kb downstream 500 false Chr01: 46988802-46989301 Phaseolus vulgaris
Phvul.001G213800 1.0kb upstream 1.0kb upstream 5169 true Chr01: 46989302-46994470 Phaseolus vulgaris
Phvul.001G213800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46993471-46994470 Phaseolus vulgaris
Phvul.001G213800 1.0kb downstream 1.0kb downstream 5169 true Chr01: 46988302-46993470 Phaseolus vulgaris
Phvul.001G213800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46988302-46989301 Phaseolus vulgaris
Phvul.001G213800 2.0kb upstream 2.0kb upstream 6169 true Chr01: 46989302-46995470 Phaseolus vulgaris
Phvul.001G213800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46993471-46995470 Phaseolus vulgaris
Phvul.001G213800 2.0kb downstream 2.0kb downstream 6169 true Chr01: 46987302-46993470 Phaseolus vulgaris
Phvul.001G213800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46987302-46989301 Phaseolus vulgaris
Phvul.001G213800 5.0kb upstream 5.0kb upstream 9169 true Chr01: 46989302-46998470 Phaseolus vulgaris
Phvul.001G213800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46993471-46998470 Phaseolus vulgaris
Phvul.001G213800 5.0kb downstream 5.0kb downstream 9169 true Chr01: 46984302-46993470 Phaseolus vulgaris
Phvul.001G213800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46984302-46989301 Phaseolus vulgaris
Phvul.001G213800 10.0kb upstream 10.0kb upstream 14169 true Chr01: 46989302-47003470 Phaseolus vulgaris
Phvul.001G213800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46993471-47003470 Phaseolus vulgaris
Phvul.001G213800 10.0kb downstream 10.0kb downstream 14169 true Chr01: 46979302-46993470 Phaseolus vulgaris
Phvul.001G213800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46979302-46989301 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041502 5273 Angiosperm View MSA
122305388 5265 Fabidae View MSA
124071292 5270 Rosid View MSA
123742118 5271 Pentapetalae View MSA
122796664 5272 Eudicot View MSA
121348202 5274 Embryophyte View MSA
123380771 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.9429 0.0 21.4678   Low
cufflinks 11.6512 0.0 33.567    
cufflinks 11.3867 0.0 33.0707    
cufflinks 5.14485 0.0 17.6873   Low
cufflinks 8.7569 0.0 26.674    
cufflinks 11.2785 0.0 33.064    
cufflinks 10.0567 0.0 29.7399    
cufflinks 9.91513 0.0 28.9979    
cufflinks 10.5627 0.0 35.7065    
cufflinks 13.6657 0.0 39.2423   High
cufflinks 9.11765 0.0 27.5272    

0 Strain