Gene : Phvul.001G200400 P. vulgaris v2.1
Defline:  (1 of 1) K04716 - sphingosine-1-phosphate phosphatase 1 (SGPP1) Genomic Order:  1986
Name:  ? Phvul.001G200400 Secondary Identifier:  ? PAC:37169860
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRIGLSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G200400 0.5kb upstream 0.5kb upstream 4487 true Chr01: 45929547-45934033 Phaseolus vulgaris
Phvul.001G200400 0.5kb upstream 0.5kb upstream 500 false Chr01: 45933534-45934033 Phaseolus vulgaris
Phvul.001G200400 0.5kb downstream 0.5kb downstream 4487 true Chr01: 45929047-45933533 Phaseolus vulgaris
Phvul.001G200400 0.5kb downstream 0.5kb downstream 500 false Chr01: 45929047-45929546 Phaseolus vulgaris
Phvul.001G200400 1.0kb upstream 1.0kb upstream 4987 true Chr01: 45929547-45934533 Phaseolus vulgaris
Phvul.001G200400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45933534-45934533 Phaseolus vulgaris
Phvul.001G200400 1.0kb downstream 1.0kb downstream 4987 true Chr01: 45928547-45933533 Phaseolus vulgaris
Phvul.001G200400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45928547-45929546 Phaseolus vulgaris
Phvul.001G200400 2.0kb upstream 2.0kb upstream 5987 true Chr01: 45929547-45935533 Phaseolus vulgaris
Phvul.001G200400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45933534-45935533 Phaseolus vulgaris
Phvul.001G200400 2.0kb downstream 2.0kb downstream 5987 true Chr01: 45927547-45933533 Phaseolus vulgaris
Phvul.001G200400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45927547-45929546 Phaseolus vulgaris
Phvul.001G200400 5.0kb upstream 5.0kb upstream 8987 true Chr01: 45929547-45938533 Phaseolus vulgaris
Phvul.001G200400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45933534-45938533 Phaseolus vulgaris
Phvul.001G200400 5.0kb downstream 5.0kb downstream 8987 true Chr01: 45924547-45933533 Phaseolus vulgaris
Phvul.001G200400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45924547-45929546 Phaseolus vulgaris
Phvul.001G200400 10.0kb upstream 10.0kb upstream 13987 true Chr01: 45929547-45943533 Phaseolus vulgaris
Phvul.001G200400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45933534-45943533 Phaseolus vulgaris
Phvul.001G200400 10.0kb downstream 10.0kb downstream 13987 true Chr01: 45919547-45933533 Phaseolus vulgaris
Phvul.001G200400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45919547-45929546 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309105 5265 Fabidae View MSA
124061101 5270 Rosid View MSA
123739708 5271 Pentapetalae View MSA
122787223 5272 Eudicot View MSA
122041787 5273 Angiosperm View MSA
121351488 5274 Embryophyte View MSA
123382186 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.0141 0.0 95.6949 High  
cufflinks 24.5392 0.0 63.7268    
cufflinks 22.0151 0.0 57.3661    
cufflinks 68.7504 0.0 181.25 High High
cufflinks 31.9216 0.0 82.5481    
cufflinks 15.1854 0.0 40.4671   Low
cufflinks 39.0484 0.0 100.992 High  
cufflinks 27.5755 0.0 71.4018    
cufflinks 42.7839 0.0 110.761 High  
cufflinks 35.0319 0.0 90.5551    
cufflinks 24.0615 0.0 62.5942    

0 Strain